Glyma12g15800 - SoyBase

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Report for Sequence Feature Glyma12g15800

Feature Type:	gene_model
Chromosome:	Gm12
Start:	14793404
stop:	14795674
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g15800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45775	AT	Annotation by Michelle Graham. TAIR10: Ribosomal L5P family protein \| chr5:18565281-18566496 REVERSE LENGTH=182	SoyBase	E_val: 1.00E-126	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG0397	KOG	60S ribosomal protein L11	JGI		ISS
PTHR11994	Panther	60S RIBOSOMAL PROTEIN L11-RELATED	JGI		ISS
PF00281	PFAM	Ribosomal protein L5	JGI		ISS
PF00673	PFAM	ribosomal L5P family C-terminus	JGI		ISS
UniRef100_I1LSJ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LSJ4_SOYBN	SoyBase	E_val: 1.00E-129	ISS
UniRef100_P46287	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L11 n=1 Tax=Medicago sativa RepID=RL11_MEDSA	SoyBase	E_val: 7.00E-128	ISS

Expression Patterns of Glyma12g15800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g15800

Paralog	Evidence	Comments
Glyma06g42680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g15800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g131700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g15800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g15800

Limit To All Plant Sequences

>Glyma12g15800.2   sequence type=transcript   gene model=Glyma12g15800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGAATGTTCCGAACTTCAGGCTTCAGAGAAGAAACTATCGAACCCAATGAGGGAAATAAAGGTGCAGAAACTCGTCCTCAATATCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCCGCCAAGGTGTTGGAACAGCTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCAAGGTACACTGTTCGGTCCTTTGGGATTAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTTAGAGGTGATAAGGCTATGCAACTTTTGGAGAGTGGTTTAAAGGTGAAGGAATATGAACTTCTCAGAAGGAACTTCAGTGATACTGGCTGCTTCGGCTTCGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTACGGAATGGATTTCTTTGTTGTTCTGGAGCGTCCTGGCTATCGCGTGGGACGTCGCCGAAGGTGCAAGTCCCGTGTTGGAATTCAGCACCGTGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTTAACAAGTCTCAGGCAATTTTTTAGTTAGATTGAGTTCACTTTAGGAGTGTGTGATCAGTTTTGTTAACTATAACTTGATCTTTCTGTGATAGTATCTTAATTTTAAGGCAGGTTTTGAATCAATGTCATTTCAGTTTCATGATGAAGCATTTGGATTAACAATAGCCCTTTTTAAACGACATTTTTACTGCAAAGAACTTGTGAACCCCTCGTTATGCAATTATGCTTGTC

>Glyma12g15800.3   sequence type=transcript   gene model=Glyma12g15800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGGCCCTTTCGAGTGAGTCCATATAATTCTGACCCAAATTGACACCAAAGTGAGTAGATCTATTAAAAAATATTGCAACCCGAATTGGGGTTTTACTTTTTATCATTGATCCTTCTCTTCCCTCTGCCGCCGCACCCTGCAAATTCAATGGCTTCAGAGAAGAAACTATCGAACCCAATGAGGGAAATAAAGGTGCAGAAACTCGTCCTCAATATCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCCGCCAAGCTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCAAGGTACACTGTTCGGTCCTTTGGGATTAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTTAGAGGTGATAAGGCTATGCAACTTTTGGAGAGTGGTTTAAAGGTGAAGGAATATGAACTTCTCAGAAGGAACTTCAGTGATACTGGCTGCTTCGGCTTCGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTACGGAATGGATTTCTTTGTTGTTCTGGAGCGTCCTGGCTATCGCGTGGGACGTCGCCGAAGGTGCAAGTCCCGTGTTGGAATTCAGCACCGTGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTTAACAAGTCTCAGGCAATTTTTTAGTTAGATTGAGTTCACTTTAGGAGTGTGTGATCAGTTTTGTTAACTATAACTTGATCTTTCTGTGATAGTATCTTAATTTTAAGGCAGGTTTTGAATCAATGTCATTTCAGTTTCATGATGAAGCATTTGGATTAACAATAGCCCTTTTTAAACGACATTTTTACTGCAAAGAACTTGTGAACCCCTCGTTATGCAATTATGCTTGTCAATTTACTTTGTTTTCTTTCTACCACATTAGAGAAGCCTGTGTGCAAAACATTTTACTTGTGAGTGCTCAAATTAG

Coding sequences of Glyma12g15800

Limit To All Plant Sequences

>Glyma12g15800.1   sequence type=CDS   gene model=Glyma12g15800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGAGAAGAAACTATCGAACCCAATGAGGGAAATAAAGGTGCAGAAACTCGTCCTCAATATCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCCGCCAAGGTGTTGGAACAGCTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCAAGGTACACTGTTCGGTCCTTTGGGATTAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTTAGAGGTGATAAGGCTATGCAACTTTTGGAGAGTGGTTTAAAGGTGAAGGAATATGAACTTCTCAGAAGGAACTTCAGTGATACTGGCTGCTTCGGCTTCGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTACGGAATGGATTTCTTTGTTGTTCTGGAGCGTCCTGGCTATCGCGTGGGACGTCGCCGAAGGTGCAAGTCCCGTGTTGGAATTCAGCACCGTGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTTAACAAGTCTCAGGCAATTTTTTAG

>Glyma12g15800.2   sequence type=CDS   gene model=Glyma12g15800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGAAATAAAGGTGCAGAAACTCGTCCTCAATATCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCCGCCAAGGTGTTGGAACAGCTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCAAGGTACACTGTTCGGTCCTTTGGGATTAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTTAGAGGTGATAAGGCTATGCAACTTTTGGAGAGTGGTTTAAAGGTGAAGGAATATGAACTTCTCAGAAGGAACTTCAGTGATACTGGCTGCTTCGGCTTCGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTACGGAATGGATTTCTTTGTTGTTCTGGAGCGTCCTGGCTATCGCGTGGGACGTCGCCGAAGGTGCAAGTCCCGTGTTGGAATTCAGCACCGTGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTTAACAAGTCTCAGGCAATTTTTTAG

>Glyma12g15800.3   sequence type=CDS   gene model=Glyma12g15800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGAGAAGAAACTATCGAACCCAATGAGGGAAATAAAGGTGCAGAAACTCGTCCTCAATATCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCCGCCAAGCTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCAAGGTACACTGTTCGGTCCTTTGGGATTAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTTAGAGGTGATAAGGCTATGCAACTTTTGGAGAGTGGTTTAAAGGTGAAGGAATATGAACTTCTCAGAAGGAACTTCAGTGATACTGGCTGCTTCGGCTTCGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTACGGAATGGATTTCTTTGTTGTTCTGGAGCGTCCTGGCTATCGCGTGGGACGTCGCCGAAGGTGCAAGTCCCGTGTTGGAATTCAGCACCGTGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTTAACAAGTCTCAGGCAATTTTTTAG

Predicted protein sequences of Glyma12g15800

Limit To All Plant Sequences

>Glyma12g15800.1   sequence type=predicted peptide   gene model=Glyma12g15800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIF*

>Glyma12g15800.2   sequence type=predicted peptide   gene model=Glyma12g15800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIF*

>Glyma12g15800.3   sequence type=predicted peptide   gene model=Glyma12g15800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIF*

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