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Report for Sequence Feature Glyma12g15790

Feature Type:gene_model
Chromosome:Gm12
Start:14790447
stop:14791835
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g15790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G45890AT Annotation by Michelle Graham. TAIR10: senescence-associated gene 12 | chr5:18613300-18614759 FORWARD LENGTH=346 SoyBaseE_val: 2.00E-118ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0007568GO-bp Annotation by Michelle Graham. GO Biological Process: aging SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009817GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0010282GO-cc Annotation by Michelle Graham. GO Cellular Compartment: senescence-associated vacuole SoyBaseN/AISS
GO:0008234GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity SoyBaseN/AISS
KOG1543 KOG Cysteine proteinase Cathepsin L JGI ISS
PTHR12411Panther CYSTEINE PROTEASE FAMILY C1-RELATED JGI ISS
PTHR12411:SF44Panther CATHEPSIN L-RELATED JGI ISS
PF00112PFAM Papain family cysteine protease JGI ISS
PF08246PFAM Cathepsin propeptide inhibitor domain (I29) JGI ISS
UniRef100_A4PIZ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine proteinase n=1 Tax=Lotus japonicus RepID=A4PIZ3_LOTJA SoyBaseE_val: 0ISS
UniRef100_UPI000233CED6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CED6 related cluster n=1 Tax=unknown RepID=UPI000233CED6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g15790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g15790
ParalogEvidenceComments
Glyma06g42670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g15790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g131500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g15790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g15790
>Glyma12g15790.1   sequence type=CDS   gene model=Glyma12g15790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCACTAGCCAAAAACAGTACACGATAGCTCTATTCCTCCTCCTTGCACTTGGGATTCCCCAAATGATGTCTCGCAAACTTCATGAGACATCTATGCGAGAAAGACACGAACAATGGATGGCGGAATATGGCAAAGTCTACAAGGATGCTGCAGAGAAGGAAAAACGTTTCCTGATATTCAAGCACAATGTGGAGTTCATTGAATCATTCAATGCTGCTGCCAACAAACCTTACAAGCTTGGCGTTAATCACCTTGCTGACCTTACAGTTGAGGAATTCAAGGCTTCCCGTAATGGATTGAAGAGGCCTTATGAGTTAAGCACAACACCATTTAAGTATGAAAATGTGACTGCAATTCCTGCAGCCATAGATTGGAGGACAAAAGGAGCTGTTACTTCAATCAAAGACCAGGGGAGCTGCTGGGCATTTTCAACTGTGGCTGCAACTGAGGGTATCCACCAAATAACTACAGGAAAACTAGTTTCCCTCTCAGAACAAGAGCTAGTGGATTGTGACACAAAAGGTGTAGACCAAGGGTGTGAAGGGGGTTACATGGAAGATGGGTTTGAATTCATTATCAAAAACGGTGGAATCACCAGTGAGGCTAACTACCCCTATAAGGCAGTTGATGGAAAATGTAACAAAGCAACCTCACCAGTGGCTCAAATTAAGGGGTATGAGAAGGTTCCTCCTAATAGCGAGAAGACACTTCAAAAAGCCGTGGCTAACCAACCAGTGTCAGTTTCTATTGATGCAAATGGTGAAGGTTTCATGTTTTACTCTAGTGGAATTTACAACGGAGAATGTGGGACTGAGCTAGACCATGGTGTTACTGCAGTGGGTTATGGCATAGCTAATGGAACTGACTATTGGCTAGTGAAGAATTCATGGGGCACACAATGGGGTGAGAAAGGATACGTAAGGATGCAACGAGGTGTAGCTGCCAAGCATGGTTTATGTGGAATTGCCTTGGATTCATCGTATCCAACTGCTTAA
Predicted protein sequences of Glyma12g15790
>Glyma12g15790.1   sequence type=predicted peptide   gene model=Glyma12g15790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFTSQKQYTIALFLLLALGIPQMMSRKLHETSMRERHEQWMAEYGKVYKDAAEKEKRFLIFKHNVEFIESFNAAANKPYKLGVNHLADLTVEEFKASRNGLKRPYELSTTPFKYENVTAIPAAIDWRTKGAVTSIKDQGSCWAFSTVAATEGIHQITTGKLVSLSEQELVDCDTKGVDQGCEGGYMEDGFEFIIKNGGITSEANYPYKAVDGKCNKATSPVAQIKGYEKVPPNSEKTLQKAVANQPVSVSIDANGEGFMFYSSGIYNGECGTELDHGVTAVGYGIANGTDYWLVKNSWGTQWGEKGYVRMQRGVAAKHGLCGIALDSSYPTA*






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