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Report for Sequence Feature Glyma12g15710

Feature Type:gene_model
Chromosome:Gm12
Start:14675829
stop:14676175
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g15710
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G24940AT Annotation by Michelle Graham. TAIR10: membrane-associated progesterone binding protein 2 | chr2:10609447-10609749 FORWARD LENGTH=100 SoyBaseE_val: 3.00E-32ISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
PTHR10281Panther MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED JGI ISS
PTHR10281:SF26Panther MEMBRANE STEROID BINDING PROTEIN JGI ISS
PF00173PFAM Cytochrome b5-like Heme/Steroid binding domain JGI ISS
UniRef100_B9RNT1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Steroid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNT1_RICCO SoyBaseE_val: 4.00E-30ISS
UniRef100_I1LSI7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LSI7_SOYBN SoyBaseE_val: 3.00E-44ISS

Expression Patterns of Glyma12g15710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g15710 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g130800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g15710
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g15710
>Glyma12g15710.2   sequence type=CDS   gene model=Glyma12g15710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTGCAGTATCACCGTGCCGTAGGCTACCCCGTTGTGGTTGTCAGCTGTGTCGTGAGAGGAGTGGGTCGCGTCAACGACGCCAGCACTGGAAAATCCTTTTACGGCCCCGGCGGCCCCTATGCCATGTTCGCCGGCAAAGACACCAGCAGAGCCCTGGCGAAGATGAGCAAGAACGACGACGACATCCCCCCCTCCCTCGACGACCTCTCTGATAAGGCGATAGACGTTCTCAATGACTGGGAGAACAAATTCCAAGCTAAGTACCTGGTGGTTGCTCGTGTTCTCAATTAA
Predicted protein sequences of Glyma12g15710
>Glyma12g15710.2   sequence type=predicted peptide   gene model=Glyma12g15710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLQYHRAVGYPVVVVSCVVRGVGRVNDASTGKSFYGPGGPYAMFAGKDTSRALAKMSKNDDDIPPSLDDLSDKAIDVLNDWENKFQAKYLVVARVLN*






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