Glyma12g15620 - SoyBase

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Report for Sequence Feature Glyma12g15620

Feature Type:	gene_model
Chromosome:	Gm12
Start:	14531991
stop:	14535186
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g15620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44480	AT	Annotation by Michelle Graham. TAIR10: beta glucosidase 17 \| chr2:18359780-18363001 FORWARD LENGTH=517	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG0626	KOG	Beta-glucosidase, lactase phlorizinhydrolase, and related proteins	JGI		ISS
PTHR10353	Panther	GLYCOSIDE HYDROLASES	JGI		ISS
PF00232	PFAM	Glycosyl hydrolase family 1	JGI		ISS
UniRef100_A8TVQ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-glucosidase G2 n=1 Tax=Medicago truncatula RepID=A8TVQ5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LSI2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSI2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g15620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g15620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g130200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g15620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g15620

Limit To All Plant Sequences

>Glyma12g15620.1   sequence type=CDS   gene model=Glyma12g15620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACAAACGACTAAGCAAGATATATCACAAGATATGGCATTCAGCGGTTATTTCCTTTTGGGCCTCATAGCTCTTGTTATTGTTAGGTCTTCCAAAGTTACATGCGAAGAATTAGCAGTTAATACAGTTTCACCTATTATTGACATTTCACTCAGTCGGAACAGTTTCCCAGAAGGGTTCATCTTTGGGGCGGGATCTTCCTCGTACCAGTTCGAAGGTGCAGCAAAGGAAGGTGGTAGAGAACCAAGTGTATGGGATACCTTCACCCATAATTATCCAGGTAAGATCATGGATAGAAGCAACGGAGACGTCGCCATTGACTCATATCACCACTACAAGGAAGATGTTGGGATGATGAAGGATATGAATTTGGATTCATATAGATTTTCCATATCATGGTCAAGGATTCTCCCTAAAGGAAAGCTAAGTGGAGGTATAAATCAAGAAGGAATCAACTATTACAACAACCTTATCAATGAGCTAGTAGCTAATGGTATACAACCACTTGTGACTCTTTTTCATTGGGATCTTCCCCAAGCATTAGAAGATGAGTATGGTGGCTTTTTAAGTCCGCGCATAGTGAAAGATTTCCGAGACTATGCGGAACTTTGCTTCAGGGAATTTGGTGATAGGGTAAAGTATTGGGTTACATTGAATGAGCCATGGAGTTACAGCCAAAATGGCTATGCAAATGGGCGAATGGCACCTGGTCGTTGTTCTGCTTGGATGAATCTGAATTGCACTGGAGGTGATTCTTCAACGGAGCCTTATTTGGTTACACATCACCAACTTCTTGCTCATGCAACAGCTGTTCGTGTGTACAAGACCAAGTATCAGGCATCTCAAAGTGGTGTGATAGGCATAACCTTGGTAGCTAATTGGTTTTTGCCGCTCAGAGATACCAAATCTGATCAAAAGGCTACAGAAAGAGCAATTGACTTCATGTATGGATGGTTCGTGGATCCATTAACCTCTGGAGACTATCCAAAAAGCATGAGATCACTTGTGCGGACACGATTACCAAAGTTTACTGCAGAGCAATCCAAACTACTTATTGGTTCATTTGATTTTATTGGCCTAAACTATTACTCTACAACATATGCCTCTGATGCACCTCATCTAAGTAACGCCCGACCTAGCTACTTAACAGATTCTCTTGTCACTCCTGCATATGAACGTGATGGGAAACCTATTGGAATAAAGATTGCCTCTGATTGGTTATATGTTTATCCAAGAGGAATTCGAGATCTTTTATTATATACCAAGGAAAAGTACAACAATCCTTTGATTTACATCACTGAAAATGGTATAAATGAGTATAATGAACCAATATTATCACTTGAAGAGTCTCTTATGGATATATTCAGAATTGATTATCATTATCGTCATCTCTTTTATCTTCGATCAGCAATTAGGGATGGTGCAAATGTGAAAGGATATTATGTATGGTCTTTGTTCGACAATTTTGAGTGGTCTTCAGGCTATACATCACGTTTCGGGATGATCTTCGTGGATTATAAAAATAATTTGAAGAGATACCAAAAACTCTCTGCACAATGGTTCAAGAATTTTCTCAGGAAAGAAACCAGGCTTTATAGCTCTTGTAAATAA

Predicted protein sequences of Glyma12g15620

Limit To All Plant Sequences

>Glyma12g15620.1   sequence type=predicted peptide   gene model=Glyma12g15620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQTTKQDISQDMAFSGYFLLGLIALVIVRSSKVTCEELAVNTVSPIIDISLSRNSFPEGFIFGAGSSSYQFEGAAKEGGREPSVWDTFTHNYPGKIMDRSNGDVAIDSYHHYKEDVGMMKDMNLDSYRFSISWSRILPKGKLSGGINQEGINYYNNLINELVANGIQPLVTLFHWDLPQALEDEYGGFLSPRIVKDFRDYAELCFREFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSAWMNLNCTGGDSSTEPYLVTHHQLLAHATAVRVYKTKYQASQSGVIGITLVANWFLPLRDTKSDQKATERAIDFMYGWFVDPLTSGDYPKSMRSLVRTRLPKFTAEQSKLLIGSFDFIGLNYYSTTYASDAPHLSNARPSYLTDSLVTPAYERDGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYNEPILSLEESLMDIFRIDYHYRHLFYLRSAIRDGANVKGYYVWSLFDNFEWSSGYTSRFGMIFVDYKNNLKRYQKLSAQWFKNFLRKETRLYSSCK*

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