Glyma12g15560 - SoyBase

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Report for Sequence Feature Glyma12g15560

Feature Type:	gene_model
Chromosome:	Gm12
Start:	14459110
stop:	14464461
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g15560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42750	AT	Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein \| chr2:17793404-17795419 FORWARD LENGTH=344	SoyBase	E_val: 3.00E-159	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
GO:0051536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding	SoyBase	N/A	ISS
KOG0716	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF173	Panther		JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_G7JDS4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=G7JDS4_MEDTR	SoyBase	E_val: 6.00E-178	ISS
UniRef100_I1LSI0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSI0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g15560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g15560

Paralog	Evidence	Comments
Glyma06g42800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g15560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g130000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g15560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g15560

Limit To All Plant Sequences

>Glyma12g15560.1   sequence type=CDS   gene model=Glyma12g15560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACAGTTATTGTCTCCAGTGTACACAGAGCCTCTCAAATCGAATTTAAGTTCCATAAGCTCATGGAGGATACTACCAAAGACTGCAACTCTTTCGAACTTTGTAACACACAATGGCAAACGAAGAGGGTGTGGCAGGGTAAGAGTTGCTGCTGAGGAAAAATCATTTTCTACGAGTGACACTGTTGCAGATGACTACTATGCAGTTTTGGGTCTGCTTCCAGATGCCACTCCAGCGCAGATCAAGAAGGCCTACTACAATTGCATGAAAGCTTGCCACCCAGACTTGAGTGACAATGATCCTGAGGCAACCAATTTCTGCACGTTCATCAATGAAGTCTATGGGGTGCTAAGTGATCCCATTCAGCGCATGATTTATGATGACATTCATGGGTATTCTTTGACTTCAATCAATCCTTTTCTGGACGATTCTAGTCCAAAGGATCATGTTTTTGTTGATGAATTTAGCTGCATAGGTTGCAAAAATTGTGCCAATGTAGCCTGTGATGTGTTTGGAATAGAAGAAGAATTTGGAAGAGCCAGAGTGTACAGCCAATGCGGGAAGCCTGAATTAGTTCAACAGGCTATTGATAGTTGCCCTGTGGACTGCATTCATTGGACATCAGCTGCACAGCTATCATTGCTTGAAGATGAAATGCGCCGCGTAGAAAGAGTCAATGTTGCCCTAATGCTTTCTGGAATGGGATCAGCAGGAACTGATGTTTTCAGAATGGCAAGTTCCCGATGGGAAAAGAGGCAGGCAAAAGTCTTGGAACAAGCAAAATTGAGAATGATGAAGGAGAAGGGTTCTGATAAAACAGATATGTTCTGGAACAATCTATGGGGCAAACCAAAAGACTTAAGTTCAGAGGAGGAAATCAAAGAAAGAGCAAAAAGGGCTGCTGCTGCCGCTAGAAGATGGAGGGAATACTCAAGAAGAGGTGTTGATAAGCCTCCCACATTTAAACTTCCAGAGACAGCCTCCACCAAGGACTAG

Predicted protein sequences of Glyma12g15560

Limit To All Plant Sequences

>Glyma12g15560.1   sequence type=predicted peptide   gene model=Glyma12g15560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQLLSPVYTEPLKSNLSSISSWRILPKTATLSNFVTHNGKRRGCGRVRVAAEEKSFSTSDTVADDYYAVLGLLPDATPAQIKKAYYNCMKACHPDLSDNDPEATNFCTFINEVYGVLSDPIQRMIYDDIHGYSLTSINPFLDDSSPKDHVFVDEFSCIGCKNCANVACDVFGIEEEFGRARVYSQCGKPELVQQAIDSCPVDCIHWTSAAQLSLLEDEMRRVERVNVALMLSGMGSAGTDVFRMASSRWEKRQAKVLEQAKLRMMKEKGSDKTDMFWNNLWGKPKDLSSEEEIKERAKRAAAAARRWREYSRRGVDKPPTFKLPETASTKD*

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