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Report for Sequence Feature Glyma12g15530

Feature Type:gene_model
Chromosome:Gm12
Start:14448988
stop:14450423
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g15530
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42760AT Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr2:17796382-17797185 REVERSE LENGTH=267 SoyBaseE_val: 9.00E-33ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF07939PFAM Protein of unknown function (DUF1685) JGI ISS
UniRef100_C6T846UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T846_SOYBN SoyBaseE_val: 5.00E-176ISS

Expression Patterns of Glyma12g15530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g15530
ParalogEvidenceComments
Glyma06g42810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g15530 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g129900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g15530
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g15530
>Glyma12g15530.1   sequence type=CDS   gene model=Glyma12g15530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCAGAACATGTTCTGAGGTTGCTAGATTCATTCTGGTTTGAGGCTTCAATTCTCTCCAGCAAAATCCCTCCAACAAATCCTATCTCTCATAATCACAAGGTGGTGGAGGAAGTGCTTCCTCTTGATGATGCAAAGCTTCTACTAGTTCCAACTCCAACCCTTGAAGTTAGGTCCTATAGTGACCAAAACTTGGACTCCACAACATGTGTTTTGTGTGATTATTCCCCATCACCAAATTCTGTGCTCACCCCACAAAGGCTTAGGACAATCCCTTCTGAGAGGGAAATCAGAGAATTCTCTAGTGGAAATCATGGAAAAGAAGGTATGAGCAATAAGAGAAAACAAAAAGGCTTTGGTCATGGAAGAAGGCCTAGGCAAGTGAGAACCAGCAGGAGCCTCTCAGAGCTTGAGTTTAAGGAGCTAAAAGGGTTTATGGATTTGGGGTTTGTGTTCTCTGAGGAGGACAAGGACTCAAAATTGGCATCTTTGATACCTGGCTTGCAAAGACTGGGAAGAGAAGATGATGAAGTGCAGTGTGATGATCAAAGTGTGGTTTCTGACAATAATAAGCCTTATTTGTCTGAGGCTTGGGATGTGTTGGACCAAAGGGAGTTGAGAAATCCTTTGCTGAATTGGAGGGTACCAGCTAGGGGTAATGAGATTGACATGAAAGACAACCTTAGGTTCTGGGCTCACACTGTTGCATCCATTGTAAGATAA
Predicted protein sequences of Glyma12g15530
>Glyma12g15530.1   sequence type=predicted peptide   gene model=Glyma12g15530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAEHVLRLLDSFWFEASILSSKIPPTNPISHNHKVVEEVLPLDDAKLLLVPTPTLEVRSYSDQNLDSTTCVLCDYSPSPNSVLTPQRLRTIPSEREIREFSSGNHGKEGMSNKRKQKGFGHGRRPRQVRTSRSLSELEFKELKGFMDLGFVFSEEDKDSKLASLIPGLQRLGREDDEVQCDDQSVVSDNNKPYLSEAWDVLDQRELRNPLLNWRVPARGNEIDMKDNLRFWAHTVASIVR*






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