Report for Sequence Feature Glyma12g15500
Feature Type: gene_model
Chromosome: Gm12
Start: 14397889
stop: 14403070
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g15500
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G06410 AT
Annotation by Michelle Graham. TAIR10: trehalose-phosphatase/synthase 7 | chr1:1955413-1958153 FORWARD LENGTH=851
SoyBase E_val: 0 ISS
GO:0005992 GO-bp
Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process
SoyBase N/A ISS
GO:0006007 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucose catabolic process
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004805 GO-mf
Annotation by Michelle Graham. GO Molecular Function: trehalose-phosphatase activity
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
KOG1050
KOG
Trehalose-6-phosphate synthase component TPS1 and related subunits
JGI ISS
PTHR10788 Panther
TREHALOSE-6-PHOSPHATE SYNTHASE
JGI ISS
PF00982 PFAM
Glycosyltransferase family 20
JGI ISS
PF02358 PFAM
Trehalose-phosphatase
JGI ISS
UniRef100_G7JCN5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Trehalose synthase-like protein n=1 Tax=Medicago truncatula RepID=G7JCN5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LSH8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSH8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g15500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g15500
Paralog Evidence Comments
Glyma06g42820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g15500 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g129800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g15500
Coding sequences of Glyma12g15500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g15500.1 sequence type=CDS gene model=Glyma12g15500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGTCCAGGTCGTATACGAATCTTTTAGATTTGGCCTCTGGGAATTTCCCGGCAATGGGGGGGAGGGAGACTAGGGAGCGGAAACGGATGCCGAGAGTTATGAGTGTCCCGGGGTTTCTCACTGAGGTAGATGATGATCAGGCAGTTAGTGTTTCCTCTGATAATCCATCAACTGTTACTACGGATAGAATGATCATTGTGGCTAACCAGCTACCGTTGAAGGCAAAGCGAAAAGAGGACAACAAAGGGTGGAGTTTCAGTTGGAATGAGGATTCATTGCTTTTACAGCTTAAGGATGGACTCCCGGATGACATGGAGGTTCTTTATGTTGGTTCATTACGCGTTGACATTGATCCAGCTGAACAGGATGATGTATCACAGTATTTATTGGATAAATTCAAATGTGTGCCGACTTTTTTACCCGCTGACGTTTTGGCAAAATTTTATGACGGCTTCTGTAAACGGCAGTTATGGCCACTTTTTCATTATATGTTACCATTTTCAACAGATAAAAGCCACCGATTTGATCGTTCTTTGTGGGAAGCTTACGTGCTGGCAAACAAGCTTTTTTTTCAGAAGGTAGTTGAAATAATAAACCCAGAGGATGATTACATTTGGATTCATGATTATCATTTGATGGTGCTGCCAACTTTTATAAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGCCCCTTTCCATCATCAGAGATATACAGGACTCTTCCGGTCAGGGAAGAGATACTGAAAGCTTTACTAAACTCTGATATCATCGGATTCCATACCTTTGACTATGCTCGTCATTTCCTTTCCTGTTGCAGTCGTATGTTGGGTCTGGAGTATCAGTCAAAGAGGGGTTATTTAGGATTGGAGTATTATGGAAGGACAATCAGTATTAAGATTATGCCTGTTGGGATTCACATGGGTCGAATTGAGTCAGTTATGAGAATGGCAGATGAGGAATGCAAGGTAAGGGAGCTCAAACAGAAATTTGAAGGAAAAACCATCTTGCTTGGTATTGATGATATGGACATTTTTAAAGGCATAAATTTGAAGATTTTGGCTATGGAGCAGATGCTCAGACAGCATCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGATAGTTAATCCTGCTAGAGGTAAAGGGATACATCTGGAGGAGATACATGCTGAAATACAAGAAAGCTGCAACAGGATCAACAGAGTGTTTGGGAGACCTGGTTATGAACCTATTGTTTTTATTGATAGAGCAGTTCCTATTGCTGAAAAAGTTGCTTATTACTGCATTGCTGAGTGTGTTATTGTCACAGCTGTAAGGGATGGAATGAACCTAACTCCTTATGAGTATATTGCATGTAGACAGGGAATATCTGGTTCTGAATCATGTTCCAATGTCAATGACCCTAAGAAGAGTATGCTAGTAATATCAGAATTTATTGGGTGTTCTCCATCACTTAGTGGGGCAATCCGTGTCAATCCATGGAATGTTGAAGCAACTTCAGAGGCAATGAATGAGGCCATCTCAACTGGTGATGGAGAGAAACAGTTGCGGCACGAGAAGCATTACCGTTATGTCAGCACTCATGATGTGGCTTACTGGTCACGTAGTTTCTTGCAAGACATGGAGCGGGCTTGCACAGACCTTCTAAGGAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCTAATTTTAAAAAGCTCTCAATCGATGCTATGGTTTCAGCTTACAAGAGGGCAAAGAATAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCACAGAACTCCATTAATAAGAGTCCAAGCAAGGAGGTCTTGTCTATTTTGGAATCACTTAGTGAAGACCCCAAAAATGTTGTTTTCATTGTTAGTGGACGGGGGAGGAATAGCTTAAGTGACTGGTTTAATTCCTGTGAAAAACTTGGAATTGCTGCAGAACATGGGTACTTCTTGAGATGGTCCCACAATCGAGAATGGGAAAATTGTGGTAAGAGCTCCGACTTTGGATGGATGCAGATTGCTGAACCTGTAATGAAACTCTATACAGAGGCGACTGATGGTTCCTCTATTGAAAGAAAAGAAAGTGCTTTGGTCTGGCAATACCGTGATGCAGACCTTGGTTTTGGATCTGCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTGGCCAATGAGCCTGTTGCTGTGAAGAGTGGCCAGTTTATTGTTGAAGTAAAACCCCAGGATGTGAGCAAAGGCTTAGTCGCCGAGAAGATATTTTCGTCAATGGACGGGAAGGGCAAACAGGCCGACTTTGTGTTGTGTGTTGGTGATGACAGATCAGATGAGGACATGTTTGAGATAGTTAGTAGTGCCATCTCAAGGAATATTCTTGCCACCAATGCTTCTGTGTTTGCTTGCACGGTTGGACAAAAACCAAGCAAAGCAAAGTATTATTTGGATGATACAACTGAGGTAACAAGCATGTTGGAATCTTTGGCTGAAGAATCAGATGCTTCACCCTACATAGAAGAAACTGGAGATTCCTCTCGGAGGCAAGTGTGA
Predicted protein sequences of Glyma12g15500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g15500.1 sequence type=predicted peptide gene model=Glyma12g15500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMSRSYTNLLDLASGNFPAMGGRETRERKRMPRVMSVPGFLTEVDDDQAVSVSSDNPSTVTTDRMIIVANQLPLKAKRKEDNKGWSFSWNEDSLLLQLKDGLPDDMEVLYVGSLRVDIDPAEQDDVSQYLLDKFKCVPTFLPADVLAKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRSLWEAYVLANKLFFQKVVEIINPEDDYIWIHDYHLMVLPTFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRMADEECKVRELKQKFEGKTILLGIDDMDIFKGINLKILAMEQMLRQHPKWQGRAVLVQIVNPARGKGIHLEEIHAEIQESCNRINRVFGRPGYEPIVFIDRAVPIAEKVAYYCIAECVIVTAVRDGMNLTPYEYIACRQGISGSESCSNVNDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATSEAMNEAISTGDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRAKNRAILLDYDGTVMPQNSINKSPSKEVLSILESLSEDPKNVVFIVSGRGRNSLSDWFNSCEKLGIAAEHGYFLRWSHNREWENCGKSSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADLGFGSAQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAEKIFSSMDGKGKQADFVLCVGDDRSDEDMFEIVSSAISRNILATNASVFACTVGQKPSKAKYYLDDTTEVTSMLESLAEESDASPYIEETGDSSRRQV*