Glyma12g15440 - SoyBase

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Report for Sequence Feature Glyma12g15440

Feature Type:	gene_model
Chromosome:	Gm12
Start:	14292532
stop:	14300670
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g15440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42700	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr2:1	SoyBase	E_val: 0	ISS
GO:0006904	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR11679	Panther	VESICLE PROTEIN SORTING-ASSOCIATED	JGI		ISS
PTHR11679:SF25	Panther		JGI		ISS
PF00995	PFAM	Sec1 family	JGI		ISS
UniRef100_I1LSH4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSH4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2RA23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2RA23_ORYSJ	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g15440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g15440

Paralog	Evidence	Comments
Glyma06g42880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g15440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g129300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g15440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g15440

Limit To All Plant Sequences

>Glyma12g15440.1   sequence type=CDS   gene model=Glyma12g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACGGTTGATGTTATTAAATCCTGCATCGATTCAATAAGACAGATATCAGAGCATATTCAAGATGCTATTGTTTATTTAGATGCTGGGTCTACAGAAAGTTTCCAATTTATTGCGGCATATCCAATACTTCTTGAACTTGGGGCACGAGCTATTTGCAGTTTGGAAAACATGTGCCCACTTGATTTGGTGGTTGATTGGAACTCAAATTCTGATCCTGGGAGGAAACTTGTGGTTATCACATCAAGTCTACTAAGTGATGCACACCGGTATATTTTACGTTGCCTGAGCGCACATCAAGTTGTTCGTCATTGCATTATATTTACATCTATCTCAGAGACAGCACACTCAGCATTTCCTGATTCACCTCTGGGGCCAGATGCATATCATGAATATGAATCCTTACTGGTTCAAGATTATGAAGAACTAGTTAAGAAATCATGGACAAAACCTGGACAGGCAAAACATAACTTTGAAGATGGAGGACGTTCAGAGTTTCCTTCCAGCGGAGAGGATGTTCTTAATCTTGAAGCTAGTTCTAGTGGAAGAGATTTTTACGAGCACAATCAATTAGACTGCATAGAAGATGCTGTGCAGAAATTGGTTGTTTCTGTTCATCATTTTCCCATGATTTTATGTCCCATTTCACCACGAGTATTTGTCCTACCTTCAGAAGGGTTGGTGGCTGAAGCATACTTATCAGCTGAGCATGAAGATTCTATTAGTCCTGGTTTGCCTCCCTTAAGTACTGGCTTGCTCTCTGATGCTGATGATGTGCCTCCTGGAGCTACTCTTACGGCACACTTTCTCTACCATTTGGCTGCCAAGATGGACTTGAAAATGGAAATTTTCTCCCTTGGTGATATATCAAAAACTGTGGGAAAAATATTGACAGACATGTCAAGTCTTTATGACGTAGGTCGCCGTAAACGATCAGCAGGGCTGTTACTCATTGATCGTACACTTGATCTTCTCACTCCTTGCTGTCATGGGGACTCACTTGTTGACCGTATGTTTTCTTCTTTGCCCCGTAGAAATAGAACATTTTCCCATGGTTCAGGAAGCCAACTCAAACTTAGTTCTTCCTACCTGCACCGTGCTCCTTTAGATGTTCAGATACCACTTGCAAAGATCCTGGATGAGGAAGATTGGCAAATAGACAATTTTCGACTTTTAGAAACTGTTGAAGCTTTTTTGTGTGGTTGGAATTCTGGTAATTCTGATTCTCAGATTGAAGGCTTGATTAACCTAAGCCAGAAAATTCATGACAAGCCTAGTCAGTCTGATGTAGAGATACTTACTGGGTCCTTTGTCTCCTCGGAAAATTTCCGTGGAATGCCATTATTGGAGGCTATTCTAGATAGAAAAACAAAAGATGGGGCCCTACTGGTCAAGAAATGGCTACAAGAAACTCTGCGCAGGGAAAATGTTACTGTGAATGTGAAGTCTCGTCCTGGTCTTGTTACAAAGCCAGAGTTGCAAGCTATGATCAAAGCTTTGTCCAGGAGCCAATCGTCTTTGCTAAGGAACAAAGGAATTATCCAATTAGCTTCAGCCACATTGTTTGCCCTTGAGGAATCAAATTATGCTAAATGGGATGCATTTAGCAGTGCAGAGAAAATTCTGGGTGTTAGTTCTGGAGAAACAAGTCAAAGTCTTGCCATTCAAATTGGTGATCTCATCAATAAGACTGCTTTTTTGGGATCACATGTAAATGAAGGGAAAAGGGAGATCTCAAAGGGGTTACTTTCTTTGCAAGATGCTTTGCTGTTGATGATCATTGGATATATATTGGCTGGTGAGAATTTTCCAACATCTGGTTCTGATGGGCCATTTTCTTGGCAAGAGGAACATTTGTTAAAGGAAGCTGTTGTAGATGCTCTTCTTGAAAATCCATCAGTAGCAAATCTCAAGTTTCTACATGGACTAAGGGAAGATCTTGAAACTAATGTAAGCAAATCAAAATCAGAGGAAACAGCTGAAGAACCTTCAAAATTAGATATTGATGATTTTGATGATGATCAGTGGGGTAAATGGGGTGACGAAGATGGTGACAATAAAAATGAAAAAGTGTATGGTGACGTGCAACTGAAGTTGGAGTTGCGTGATAGGGTGGATAACTTTTTCAAATTTCTTCATAAGTTATCTGATCTGAAAAGAAAGAATATACCATTGAGGGATGGATCATTGACTACGGAAGCTAATTTTGATGAGGATAGAAAAGGATTACTTTATAAGCTACTAACAAGGGTGTTGGGCAAGTACGATGTGCCTGGGTTAGAATATCATTCTTCCACTGTGGGGCGCTTGTTTAAAAGTGGGTTTGGAAGATTTGGCCTTGGTCAGGCCAAACCAAGTCTTGCCGATCAAAATGTCATTTTGGTGTTTGTTATTGGGGGCATTAATGGACTCGAGGTGCGTGAAGCTCATAAGGCATTGGGTGAAAGTGGAAGACCTGATATAGAGTTGCTTGTTGGTGGAACAACTCTCCTCACTTCCAATGACATGCTCGACTTACTGTTAGGGGACTCGAGTTACATTTAA

Predicted protein sequences of Glyma12g15440

Limit To All Plant Sequences

>Glyma12g15440.1   sequence type=predicted peptide   gene model=Glyma12g15440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVDVIKSCIDSIRQISEHIQDAIVYLDAGSTESFQFIAAYPILLELGARAICSLENMCPLDLVVDWNSNSDPGRKLVVITSSLLSDAHRYILRCLSAHQVVRHCIIFTSISETAHSAFPDSPLGPDAYHEYESLLVQDYEELVKKSWTKPGQAKHNFEDGGRSEFPSSGEDVLNLEASSSGRDFYEHNQLDCIEDAVQKLVVSVHHFPMILCPISPRVFVLPSEGLVAEAYLSAEHEDSISPGLPPLSTGLLSDADDVPPGATLTAHFLYHLAAKMDLKMEIFSLGDISKTVGKILTDMSSLYDVGRRKRSAGLLLIDRTLDLLTPCCHGDSLVDRMFSSLPRRNRTFSHGSGSQLKLSSSYLHRAPLDVQIPLAKILDEEDWQIDNFRLLETVEAFLCGWNSGNSDSQIEGLINLSQKIHDKPSQSDVEILTGSFVSSENFRGMPLLEAILDRKTKDGALLVKKWLQETLRRENVTVNVKSRPGLVTKPELQAMIKALSRSQSSLLRNKGIIQLASATLFALEESNYAKWDAFSSAEKILGVSSGETSQSLAIQIGDLINKTAFLGSHVNEGKREISKGLLSLQDALLLMIIGYILAGENFPTSGSDGPFSWQEEHLLKEAVVDALLENPSVANLKFLHGLREDLETNVSKSKSEETAEEPSKLDIDDFDDDQWGKWGDEDGDNKNEKVYGDVQLKLELRDRVDNFFKFLHKLSDLKRKNIPLRDGSLTTEANFDEDRKGLLYKLLTRVLGKYDVPGLEYHSSTVGRLFKSGFGRFGLGQAKPSLADQNVILVFVIGGINGLEVREAHKALGESGRPDIELLVGGTTLLTSNDMLDLLLGDSSYI*

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