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Report for Sequence Feature Glyma12g15421

Feature Type:gene_model
Chromosome:Gm12
Start:14253708
stop:14259165
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g15421
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42680AT Annotation by Michelle Graham. TAIR10: multiprotein bridging factor 1A | chr2:17774972-17776116 FORWARD LENGTH=142 SoyBaseE_val: 3.00E-83ISS
GO:0006351GO-bp Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003713GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG3398 KOG Transcription factor MBF1 JGI ISS
PTHR10245Panther ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 (MULTIPROTEIN BRIDGING FACTOR 1) JGI ISS
PF01381PFAM Helix-turn-helix JGI ISS
PF08523PFAM Multiprotein bridging factor 1 JGI ISS
UniRef100_C6T1P5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T1P5_SOYBN SoyBaseE_val: 1.00E-94ISS
UniRef100_D7LJB8UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATMBF1A/MBF1A n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LJB8_ARALL SoyBaseE_val: 1.00E-82ISS

Expression Patterns of Glyma12g15421
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g15421 not represented in the dataset
Glyma12g15421 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g15421
ParalogEvidenceComments
Glyma06g42900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g15421 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g129100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g15421
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g15421
>Glyma12g15421.1   sequence type=CDS   gene model=Glyma12g15421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTGGGGATGGCAGATCGCAAAGGAAAGTGTTTTGTTGTAAGAACGATGGGTGTTTGGGGGAAGGATAGGGATGACAATGCTCATGGTCTAGGTAAGGAAAAAAGGAATTGGGATTTGGAAATCCTTTTCTGTTTGCTCCATCCAAATACAGAAATATCATTTTCCGAGACAATCCCATCTTCCATTTCCATCTTCAATATTTCTTCTCATCGAGAAGCTTCGCGAACGAAAACAAAGAACCCTAGACAGATCCATTCCATAGCCATGTCAGGTGTTGGCCCTCTATCTCAGGATTGGGAACCCGTCGTCCTCCGCAAGAAGGCTCCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGGCGCTCCGGCGCGGAAATTGAAACCCTAAAAAAGTATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCATGAGAAGGTACCAACTGAACTTAAGAAGGCTATAATGCAAGCTAGGATGGACAAGAAACTCACTCAGGCTCAGCTTGCTCAACTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTGGGAAGTTGGAAAGGGCTCTTGGAGCAAAATTGCGTGGCAAGAAATAA
Predicted protein sequences of Glyma12g15421
>Glyma12g15421.1   sequence type=predicted peptide   gene model=Glyma12g15421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLGMADRKGKCFVVRTMGVWGKDRDDNAHGLGKEKRNWDLEILFCLLHPNTEISFSETIPSSISIFNISSHREASRTKTKNPRQIHSIAMSGVGPLSQDWEPVVLRKKAPTAAAKKDEKAVNAARRSGAEIETLKKYNAGTNKAASSSTSLNTKRLDDDTENLAHEKVPTELKKAIMQARMDKKLTQAQLAQLINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK*






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