Glyma12g15400 - SoyBase

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Report for Sequence Feature Glyma12g15400

Feature Type:	gene_model
Chromosome:	Gm12
Start:	14199395
stop:	14206464
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g15400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42670	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1637) \| chr2:17772004-17773700 REVERSE LENGTH=241	SoyBase	E_val: 3.00E-128	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0047800	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteamine dioxygenase activity	SoyBase	N/A	ISS
KOG4281	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR22966	Panther	UNCHARACTERIZED	JGI		ISS
PF07847	PFAM	Protein of unknown function (DUF1637)	JGI		ISS
UniRef100_G7JCM6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NBS-LRR resistance-like protein 4U n=1 Tax=Medicago truncatula RepID=G7JCM6_MEDTR	SoyBase	E_val: 2.00E-138	ISS
UniRef100_I1LSG9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSG9_SOYBN	SoyBase	E_val: 5.00E-177	ISS

Expression Patterns of Glyma12g15400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g15400

Paralog	Evidence	Comments
Glyma06g42920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g15400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g128900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g15400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g15400

Limit To All Plant Sequences

>Glyma12g15400.3   sequence type=transcript   gene model=Glyma12g15400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTATTTCAACGAAAAAAAAAACAGTAATGACGTGTCCAAGATCTTCGTTGGCCTTTTTCTTTTCACCTCCTACCCTTTATGTTCCTCGCAACAGCAAACACAGCGATCCCTCGCTCGCTTCATCATTCTTCTATGCACTCTCATTCATCTTCCTTCAACAACCCCTTCATCATCTTCTTCTTCTTTTTCTTCTCTCAATCCAACATGTTCAACTACCTTCTCTCCCTCTAACGATGGACCACTCAGATCCATTGATTTGATAGTTGCAAAGGAAAAGATACGACCATGCAGATTCATTACCATTGGTTTGATTCTGAAGCTAAAATACGGTTGTTATCTAATTGTATATCCAGTCTCTATTGCAATTGATAAGCCACTTTCAAGGTGTTATCATCTTGCTGACACTGGAGACTTTGGTCTGAGTGAATAGATAAATTGGTCACAAGTTTGCAAGATGCCATATTATATACAGAGACTTTATAGGCTATGCAATGCATCCTTTTCACCTGATGGACCTGTGTCAGAAGAGGCCATTGAGAAAGTTCGTGAGAAGTTAGAAAAAATCAAGCCATCAGATGTAGGTCTTGAACAAGAGGCACAAGTGGTTCAGAATTGGTCCGGTTCAATGCTTGAACGTAATGGGAGCCATCAATCTTTGCCACCTATCAAATATTTGCATTTGCATGAAAGTGATTCCTTCTCTATAGGAATTTTTTGCATGCCCCCCTCTTCTATCATTCCTCTCCATAATCATCCTGGAATGACAGTGTTGAGCAAGCTGTTATATGGCTCAATGTATGTTAAATCCTATGATTGGATTGATGCACCTGGATCCACTGATCCATCCGAAGCTAGACCTGCAAAGCTTGTCAAAGATACTGAGATGACAGCGCTGATTCCCACAACAGTTCTCTATCCCACCAGCGGAGGAAACATCCATTGTTTCAGCGCTATAACTCCATGTGCAATCTTTGACATATTGTCTCCCCCCTACTCTTCAGACCATGGAAGACACTGCACCTACTTCCGGAGATCCCAACGGAAAGATCTTCCAGTTAATGTTCTGTTGAACGGAGTGACGGTTTCTGAAGTGACTTGGTTGGAAGATTTCCAACCTCCTGATGACTTTGTGATCCGGAAAGGGCAGTACAGGGGTCCAGTTATTAGAACTTGAAAATTTTATTGTTTGATGTGTCTTACTACACCAAAAGGAAATTGGCTTATGTTTAGGTTACAACAAAGGAAACTGTGGAATGTGGAATAATTATATTCTTTGTCTATGTCCTTTAGGCATTGGAGTATGTACATAATAATGCATTAGTGTAATTATTTACAGACCTCAGCTTAATCCATTAGAATAGTTAACTGTATGTTGAAATAGTACTTCCCCGTGGCCATATCAAAATTTGTTTTCGTGGAGAATAAGAGGGTATTGTGACTTGGTCCAGAGTTCTTGTTACATTGTGTTATTTTCAGGCTCCACATAAGTTAAAATCAGCTTTTGGAGAAGTTAATATGAAAAAGTTTATATATACATTTCATACATAAGCTAATTTTAGTTTATAAAAAAACTTGTTTAATTTTTA

Coding sequences of Glyma12g15400

Limit To All Plant Sequences

>Glyma12g15400.1   sequence type=CDS   gene model=Glyma12g15400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATATTATATACAGAGACTTTATAGGCTATGCAATGCATCCTTTTCACCTGATGGACCTGTGTCAGAAGAGGCCATTGAGAAAGTTCGTGAGAAGTTAGAAAAAATCAAGCCATCAGATGTAGGTCTTGAACAAGAGGCACAAGTGGTTCAGAATTGGTCCGGTTCAATGCTTGAACGTAATGGGAGCCATCAATCTTTGCCACCTATCAAATATTTGCATTTGCATGAAAGTGATTCCTTCTCTATAGGAATTTTTTGCATGCCCCCCTCTTCTATCATTCCTCTCCATAATCATCCTGGAATGACAGTGTTGAGCAAGCTGTTATATGGCTCAATGTATGTTAAATCCTATGATTGGATTGATGCACCTGGATCCACTGATCCATCCGAAGCTAGACCTGCAAAGCTTGTCAAAGATACTGAGATGACAGCGCTGATTCCCACAACAGTTCTCTATCCCACCAGCGGAGGAAACATCCATTGTTTCAGCGCTATAACTCCATGTGCAATCTTTGACATATTGTCTCCCCCCTACTCTTCAGACCATGGAAGACACTGCACCTACTTCCGGAGATCCCAACGGAAAGATCTTCCAGTTAATGTTCTGTTGAACGGAGTGACGGTTTCTGAAGTGACTTGGTTGGAAGATTTCCAACCTCCTGATGACTTTGTGATCCGGAAAGGGCAGTACAGGGGTCCAGTTATTAGAACTTGA

>Glyma12g15400.3   sequence type=CDS   gene model=Glyma12g15400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATATTATATACAGAGACTTTATAGGCTATGCAATGCATCCTTTTCACCTGATGGACCTGTGTCAGAAGAGGCCATTGAGAAAGTTCGTGAGAAGTTAGAAAAAATCAAGCCATCAGATGTAGGTCTTGAACAAGAGGCACAAGTGGTTCAGAATTGGTCCGGTTCAATGCTTGAACGTAATGGGAGCCATCAATCTTTGCCACCTATCAAATATTTGCATTTGCATGAAAGTGATTCCTTCTCTATAGGAATTTTTTGCATGCCCCCCTCTTCTATCATTCCTCTCCATAATCATCCTGGAATGACAGTGTTGAGCAAGCTGTTATATGGCTCAATGTATGTTAAATCCTATGATTGGATTGATGCACCTGGATCCACTGATCCATCCGAAGCTAGACCTGCAAAGCTTGTCAAAGATACTGAGATGACAGCGCTGATTCCCACAACAGTTCTCTATCCCACCAGCGGAGGAAACATCCATTGTTTCAGCGCTATAACTCCATGTGCAATCTTTGACATATTGTCTCCCCCCTACTCTTCAGACCATGGAAGACACTGCACCTACTTCCGGAGATCCCAACGGAAAGATCTTCCAGTTAATGTTCTGTTGAACGGAGTGACGGTTTCTGAAGTGACTTGGTTGGAAGATTTCCAACCTCCTGATGACTTTGTGATCCGGAAAGGGCAGTACAGGGGTCCAGTTATTAGAACTTGA

Predicted protein sequences of Glyma12g15400

Limit To All Plant Sequences

>Glyma12g15400.1   sequence type=predicted peptide   gene model=Glyma12g15400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPYYIQRLYRLCNASFSPDGPVSEEAIEKVREKLEKIKPSDVGLEQEAQVVQNWSGSMLERNGSHQSLPPIKYLHLHESDSFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSMYVKSYDWIDAPGSTDPSEARPAKLVKDTEMTALIPTTVLYPTSGGNIHCFSAITPCAIFDILSPPYSSDHGRHCTYFRRSQRKDLPVNVLLNGVTVSEVTWLEDFQPPDDFVIRKGQYRGPVIRT*

>Glyma12g15400.3   sequence type=predicted peptide   gene model=Glyma12g15400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPYYIQRLYRLCNASFSPDGPVSEEAIEKVREKLEKIKPSDVGLEQEAQVVQNWSGSMLERNGSHQSLPPIKYLHLHESDSFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSMYVKSYDWIDAPGSTDPSEARPAKLVKDTEMTALIPTTVLYPTSGGNIHCFSAITPCAIFDILSPPYSSDHGRHCTYFRRSQRKDLPVNVLLNGVTVSEVTWLEDFQPPDDFVIRKGQYRGPVIRT*

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