Glyma12g15390 - SoyBase

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Report for Sequence Feature Glyma12g15390

Feature Type:	gene_model
Chromosome:	Gm12
Start:	14185086
stop:	14189220
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g15390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30990	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF688) \| chr2:13187776-13189761 REVERSE LENGTH=593	SoyBase	E_val: 2.00E-58	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05097	PFAM	Protein of unknown function (DUF688)	JGI		ISS
UniRef100_B9DH03	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT2G30990 protein n=1 Tax=Arabidopsis thaliana RepID=B9DH03_ARATH	SoyBase	E_val: 5.00E-56	ISS
UniRef100_I1LSG8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LSG8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g15390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g15390

Paralog	Evidence	Comments
Glyma06g42980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g15390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g128800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g15390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g15390

Limit To All Plant Sequences

>Glyma12g15390.2   sequence type=transcript   gene model=Glyma12g15390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGCATATTGCAGTGTAAGCTGGTAAGTTCAGTTTCTGCTTGCAGCCAACCAAGCAGCAATAAACACAAACTTACAAACTGGTTTATTCTCAAACTTTCTCTCTCTCTCGCTTCATTCTCCCTTCTTCTTGCGTAAAGATATACGAAGCTTCCTCTTCTTCTCTGAGGGTGTACCTTTGGTTCATTGAAGGTTTTTCCTTCACCAACTTTCCAGAGGAAGAAAGTGCCTTGATTTCCGAACCTGCTCGTTTTATTACCGAGACACCAAATACATGATACTAAAAACTCTAATGGAAGAAAAGCAGTTAGATTTTAATCAGCCTCTTTTATCGGTAAGGCGAATCTCGTCAACAGCGGCCTCTGAAAATGACTATAAAAGAAAACCTGATAAACCAGTACCCAAACGACCTCCTCTTCCGTTTTACAAATCAGAGTTAAAATCGGGTCCAGTGACTAACCCTGGAACTGTTCCTTTTGTATGGGAGAAGACTCCTGGAAGACCTAAGAATGAAAGCAAACAACAAACACAGGCTGTTGAACGTCCATCCGTTGCTCCGAAGCTTCCACCTGGGAGGGTTTTGAAAGTTGAACAGCAAGATTCCGATAAAGTTCCTAAAGGTGCATCCGTTACTCAATCCAGAACAGGAAGCAGTGTTTCAGATTCTCCGCGTACTGCATCTCTAGATAATAAAGTGACAAAACATGAAATCCCCCAAGTAATTGAGGAAAAAGCAAGTTCTGTTTCAAATGATGAGGATGAGAACTATCTAGATGCTCTTGATACACTTTCTAGAACTGAATCATTCTTCATGAGCTGTAGCGTGAGTGGTTTGAGTGAATGGGATGGTCCAGATGTCCAACCATCAGGAAATTTTTCAACAGACCAACAGACACGTGATTTCATGATTGGCAGGTTCTTGCCTGCAGCAAAGGCAATGGCTTCTGAAACACCTCAAATTCAACACAACTCTAGGAAGTCGCTTGTTACACAAGAACAACTGAAACAGGCAAGGAAAGTAGAAAGTGGAGCAAATTCCCGTCCCCTTAATCCGAAATGGCAAAAGGTTTTGCCACATTATGCTCAAGATATTGGTAGGGAAGAAAGCGAAGATGAAAGTGATGATCATGATGGATATGAAAACTATGCACCCAAAGTTTGTGGGCTGTTTCCTCGGTTCTGCCTTTTGAATCCAGTTCCAGGATTAAGAATGGAGGGTAGGATTCCAAGTTCTACAGTTCATGGAGTGCAGGGTAAATCAATTACTTCTCACAGAAGAACTGCAAAAGAGCATGGTAGAACTGCTACTTATGGGAAAAAGTCTGTAAACTCCCAATCTGGCTATACAGAAGAGAGAGATTTTCTGAGTACTGCAGAAAAATCTAAGCATGATATTGATCCACATCGCAGAGCTTGCAGCAAATCATTAGCCTCTGAGAGAACTGAATTTGAATCAAGTTGTGAAAGCCCTGTTATTGAGAAAACTCTATATGTAGATTCTGTACATAAGGTCAAAACTTCAATTTCATGTTCTTCAGACACCAATCTCAGAGGGGATGATTTTGATACTCTAAGAAAAGACACTGACCTTGATAAAAACCTTTCTATTGATTTTTCTATTGAGGATAGCAAACACTTGGGAATTGTGGATGAGAAGGCAGTATCAGAACCTGAAATTTCAGCTTCTCTTGATTCATCTCTCCTGGTTTGTTCTGATAATTCAAATGACAATATGCAAATGGAAATGAAAAATCATTCCAACAAAATATGCCCAGAAAAGCAAGAATTGACAAAGCCTGATTACCAAGGAAGTAACCTAGATCATGATTTGGTTGCGATTTCAAGTCCAGAAATGGTTGCATGGGAGAAAATAGAGTCTGAAAGCAAAGGTTTTAGCAGTAAGGAAAGTTCTAATGGCCTAATCAAGAATCCTATTGCATGGAGAAACAGGAAATTTGCTAGTGATTTGAAATTTGATTCAATGTGCCAACAAGCTACCAAATTGGTTGATCAAGAATGCACTATCAGATCTAGCGAGGATCCTAGAACTTTGGCTAGCTCGAAGGTGGTAGGTGACAGAAAGATCAACTTAGAAAGTCAATTGCAGATGAAGTTGGGCCATGGAAAGACTTCAAATGCAAGCTCGTTGAAGCTTCCTCTTGCCCTTCCTTCACCAAAAGCTCCTTCAGAGTCTTGGCTTAAGCGCACTTTACCGACAGTTTCCTCGAAGAATATATCTTTACGGTTGAATCTTGCTACCCACTATCATGCACCAACTCAAACACCCAAGACAGCATTACCGGATCCTAAGTGGGAAAGAATTGTTAAATCTTCTGAAGTTAATCATGGGCATCTTCAGTTTGCTCAGGAACTACTTCCACCCATTCCAGAAGCATGAATTTTCTAGAGATATCAGGTCATTGGTAATTTGATTTTCTTGCTAAAATGTGCCACGTTTTCTTAGTGTAATTATTTGTTCTTAGGATTTTCATTCTACAGTTTGGTCTCCCTTTAGCTTTTTTATATATACATGAGATGGTATACTATTCAAAAGTGTAAATCACAGTTTTGTCTTATAAATGTAATAAGTTGTTTCAAGTAAAATTTATCATTGTAATAATATCAGGGCAAAAGACCTTTTGCCTAAAAAAATGTTTCTTAAGAAGATACTGCAAAGAATAAATTTGTAGTGATGATTATGGCTATTGGTGGTCCTCCTTCAATTTTCTTCAACTGTATGTAGAGTAAACACCTTTTACTATCG

Coding sequences of Glyma12g15390

Limit To All Plant Sequences

>Glyma12g15390.1   sequence type=CDS   gene model=Glyma12g15390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATACTAAAAACTCTAATGGAAGAAAAGCAGTTAGATTTTAATCAGCCTCTTTTATCGGTAAGGCGAATCTCGTCAACAGCGGCCTCTGAAAATGACTATAAAAGAAAACCTGATAAACCAGTACCCAAACGACCTCCTCTTCCGTTTTACAAATCAGAGTTAAAATCGGGTCCAGTGACTAACCCTGGAACTGTTCCTTTTGTATGGGAGAAGACTCCTGGAAGACCTAAGAATGAAAGCAAACAACAAACACAGGCTGTTGAACGTCCATCCGTTGCTCCGAAGCTTCCACCTGGGAGGGTTTTGAAAGTTGAACAGCAAGATTCCGATAAAGTTCCTAAAGGTGCATCCGTTACTCAATCCAGAACAGGAAGCAGTGTTTCAGATTCTCCGCGTACTGCATCTCTAGATAATAAAGTGACAAAACATGAAATCCCCCAAGTAATTGAGGAAAAAGCAAGTTCTGTTTCAAATGATGAGGATGAGAACTATCTAGATGCTCTTGATACACTTTCTAGAACTGAATCATTCTTCATGAGCTGTAGCGTGAGTGGTTTGAGTGAATGGGATGGTCCAGATGTCCAACCATCAGGAAATTTTTCAACAGACCAACAGACACGTGATTTCATGATTGGCAGGTTCTTGCCTGCAGCAAAGGCAATGGCTTCTGAAACACCTCAAATTCAACACAACTCTAGGAAGTCGCTTGTTACACAAGAACAACTGAAACAGGCAAGGAAAGTAGAAAGTGGAGCAAATTCCCGTCCCCTTAATCCGAAATGGCAAAAGGTTTTGCCACATTATGCTCAAGATATTGGTAGGGAAGAAAGCGAAGATGAAAGTGATGATCATGATGGATATGAAAACTATGCACCCAAAGTTTGTGGGCTGTTTCCTCGGTTCTGCCTTTTGAATCCAGTTCCAGGATTAAGAATGGAGGGTAGGATTCCAAGTTCTACAGTTCATGGAGTGCAGGGTAAATCAATTACTTCTCACAGAAGAACTGCAAAAGAGCATGGTAGAACTGCTACTTATGGGAAAAAGTCTGTAAACTCCCAATCTGGCTATACAGAAGAGAGAGATTTTCTGAGTACTGCAGAAAAATCTAAGCATGATATTGATCCACATCGCAGAGCTTGCAGCAAATCATTAGCCTCTGAGAGAACTGAATTTGAATCAAGTTGTGAAAGCCCTGTTATTGAGAAAACTCTATATGTAGATTCTGTACATAAGGTCAAAACTTCAATTTCATGTTCTTCAGACACCAATCTCAGAGGGGATGATTTTGATACTCTAAGAAAAGACACTGACCTTGATAAAAACCTTTCTATTGATTTTTCTATTGAGGATAGCAAACACTTGGGAATTGTGGATGAGAAGGCAGTATCAGAACCTGAAATTTCAGCTTCTCTTGATTCATCTCTCCTGGTTTGTTCTGATAATTCAAATGACAATATGCAAATGGAAATGAAAAATCATTCCAACAAAATATGCCCAGAAAAGCAAGAATTGACAAAGCCTGATTACCAAGGAAGTAACCTAGATCATGATTTGGTTGCGATTTCAAGTCCAGAAATGGTTGCATGGGAGAAAATAGAGTCTGAAAGCAAAGGTTTTAGCAGTAAGGAAAGTTCTAATGGCCTAATCAAGAATCCTATTGCATGGAGAAACAGGAAATTTGCTAGTGATTTGAAATTTGATTCAATGTGCCAACAAGCTACCAAATTGGTTGATCAAGAATGCACTATCAGATCTAGCGAGGATCCTAGAACTTTGGCTAGCTCGAAGGTGGTAGGTGACAGAAAGATCAACTTAGAAAGTCAATTGCAGATGAAGTTGGGCCATGGAAAGACTTCAAATGCAAGCTCGTTGAAGCTTCCTCTTGCCCTTCCTTCACCAAAAGCTCCTTCAGAGTCTTGGCTTAAGCGCACTTTACCGACAGTTTCCTCGAAGAATATATCTTTACGGTTGAATCTTGCTACCCACTATCATGCACCAACTCAAACACCCAAGACAGCATTACCGGATCCTAAGTGGGAAAGAATTGTTAAATCTTCTGAAGTTAATCATGGGCATCTTCAGTTTGCTCAGGAACTACTTCCACCCATTCCAGAAGCATGA

>Glyma12g15390.2   sequence type=CDS   gene model=Glyma12g15390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATACTAAAAACTCTAATGGAAGAAAAGCAGTTAGATTTTAATCAGCCTCTTTTATCGGTAAGGCGAATCTCGTCAACAGCGGCCTCTGAAAATGACTATAAAAGAAAACCTGATAAACCAGTACCCAAACGACCTCCTCTTCCGTTTTACAAATCAGAGTTAAAATCGGGTCCAGTGACTAACCCTGGAACTGTTCCTTTTGTATGGGAGAAGACTCCTGGAAGACCTAAGAATGAAAGCAAACAACAAACACAGGCTGTTGAACGTCCATCCGTTGCTCCGAAGCTTCCACCTGGGAGGGTTTTGAAAGTTGAACAGCAAGATTCCGATAAAGTTCCTAAAGGTGCATCCGTTACTCAATCCAGAACAGGAAGCAGTGTTTCAGATTCTCCGCGTACTGCATCTCTAGATAATAAAGTGACAAAACATGAAATCCCCCAAGTAATTGAGGAAAAAGCAAGTTCTGTTTCAAATGATGAGGATGAGAACTATCTAGATGCTCTTGATACACTTTCTAGAACTGAATCATTCTTCATGAGCTGTAGCGTGAGTGGTTTGAGTGAATGGGATGGTCCAGATGTCCAACCATCAGGAAATTTTTCAACAGACCAACAGACACGTGATTTCATGATTGGCAGGTTCTTGCCTGCAGCAAAGGCAATGGCTTCTGAAACACCTCAAATTCAACACAACTCTAGGAAGTCGCTTGTTACACAAGAACAACTGAAACAGGCAAGGAAAGTAGAAAGTGGAGCAAATTCCCGTCCCCTTAATCCGAAATGGCAAAAGGTTTTGCCACATTATGCTCAAGATATTGGTAGGGAAGAAAGCGAAGATGAAAGTGATGATCATGATGGATATGAAAACTATGCACCCAAAGTTTGTGGGCTGTTTCCTCGGTTCTGCCTTTTGAATCCAGTTCCAGGATTAAGAATGGAGGGTAGGATTCCAAGTTCTACAGTTCATGGAGTGCAGGGTAAATCAATTACTTCTCACAGAAGAACTGCAAAAGAGCATGGTAGAACTGCTACTTATGGGAAAAAGTCTGTAAACTCCCAATCTGGCTATACAGAAGAGAGAGATTTTCTGAGTACTGCAGAAAAATCTAAGCATGATATTGATCCACATCGCAGAGCTTGCAGCAAATCATTAGCCTCTGAGAGAACTGAATTTGAATCAAGTTGTGAAAGCCCTGTTATTGAGAAAACTCTATATGTAGATTCTGTACATAAGGTCAAAACTTCAATTTCATGTTCTTCAGACACCAATCTCAGAGGGGATGATTTTGATACTCTAAGAAAAGACACTGACCTTGATAAAAACCTTTCTATTGATTTTTCTATTGAGGATAGCAAACACTTGGGAATTGTGGATGAGAAGGCAGTATCAGAACCTGAAATTTCAGCTTCTCTTGATTCATCTCTCCTGGTTTGTTCTGATAATTCAAATGACAATATGCAAATGGAAATGAAAAATCATTCCAACAAAATATGCCCAGAAAAGCAAGAATTGACAAAGCCTGATTACCAAGGAAGTAACCTAGATCATGATTTGGTTGCGATTTCAAGTCCAGAAATGGTTGCATGGGAGAAAATAGAGTCTGAAAGCAAAGGTTTTAGCAGTAAGGAAAGTTCTAATGGCCTAATCAAGAATCCTATTGCATGGAGAAACAGGAAATTTGCTAGTGATTTGAAATTTGATTCAATGTGCCAACAAGCTACCAAATTGGTTGATCAAGAATGCACTATCAGATCTAGCGAGGATCCTAGAACTTTGGCTAGCTCGAAGGTGGTAGGTGACAGAAAGATCAACTTAGAAAGTCAATTGCAGATGAAGTTGGGCCATGGAAAGACTTCAAATGCAAGCTCGTTGAAGCTTCCTCTTGCCCTTCCTTCACCAAAAGCTCCTTCAGAGTCTTGGCTTAAGCGCACTTTACCGACAGTTTCCTCGAAGAATATATCTTTACGGTTGAATCTTGCTACCCACTATCATGCACCAACTCAAACACCCAAGACAGCATTACCGGATCCTAAGTGGGAAAGAATTGTTAAATCTTCTGAAGTTAATCATGGGCATCTTCAGTTTGCTCAGGAACTACTTCCACCCATTCCAGAAGCATGA

Predicted protein sequences of Glyma12g15390

Limit To All Plant Sequences

>Glyma12g15390.1   sequence type=predicted peptide   gene model=Glyma12g15390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILKTLMEEKQLDFNQPLLSVRRISSTAASENDYKRKPDKPVPKRPPLPFYKSELKSGPVTNPGTVPFVWEKTPGRPKNESKQQTQAVERPSVAPKLPPGRVLKVEQQDSDKVPKGASVTQSRTGSSVSDSPRTASLDNKVTKHEIPQVIEEKASSVSNDEDENYLDALDTLSRTESFFMSCSVSGLSEWDGPDVQPSGNFSTDQQTRDFMIGRFLPAAKAMASETPQIQHNSRKSLVTQEQLKQARKVESGANSRPLNPKWQKVLPHYAQDIGREESEDESDDHDGYENYAPKVCGLFPRFCLLNPVPGLRMEGRIPSSTVHGVQGKSITSHRRTAKEHGRTATYGKKSVNSQSGYTEERDFLSTAEKSKHDIDPHRRACSKSLASERTEFESSCESPVIEKTLYVDSVHKVKTSISCSSDTNLRGDDFDTLRKDTDLDKNLSIDFSIEDSKHLGIVDEKAVSEPEISASLDSSLLVCSDNSNDNMQMEMKNHSNKICPEKQELTKPDYQGSNLDHDLVAISSPEMVAWEKIESESKGFSSKESSNGLIKNPIAWRNRKFASDLKFDSMCQQATKLVDQECTIRSSEDPRTLASSKVVGDRKINLESQLQMKLGHGKTSNASSLKLPLALPSPKAPSESWLKRTLPTVSSKNISLRLNLATHYHAPTQTPKTALPDPKWERIVKSSEVNHGHLQFAQELLPPIPEA*

>Glyma12g15390.2   sequence type=predicted peptide   gene model=Glyma12g15390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILKTLMEEKQLDFNQPLLSVRRISSTAASENDYKRKPDKPVPKRPPLPFYKSELKSGPVTNPGTVPFVWEKTPGRPKNESKQQTQAVERPSVAPKLPPGRVLKVEQQDSDKVPKGASVTQSRTGSSVSDSPRTASLDNKVTKHEIPQVIEEKASSVSNDEDENYLDALDTLSRTESFFMSCSVSGLSEWDGPDVQPSGNFSTDQQTRDFMIGRFLPAAKAMASETPQIQHNSRKSLVTQEQLKQARKVESGANSRPLNPKWQKVLPHYAQDIGREESEDESDDHDGYENYAPKVCGLFPRFCLLNPVPGLRMEGRIPSSTVHGVQGKSITSHRRTAKEHGRTATYGKKSVNSQSGYTEERDFLSTAEKSKHDIDPHRRACSKSLASERTEFESSCESPVIEKTLYVDSVHKVKTSISCSSDTNLRGDDFDTLRKDTDLDKNLSIDFSIEDSKHLGIVDEKAVSEPEISASLDSSLLVCSDNSNDNMQMEMKNHSNKICPEKQELTKPDYQGSNLDHDLVAISSPEMVAWEKIESESKGFSSKESSNGLIKNPIAWRNRKFASDLKFDSMCQQATKLVDQECTIRSSEDPRTLASSKVVGDRKINLESQLQMKLGHGKTSNASSLKLPLALPSPKAPSESWLKRTLPTVSSKNISLRLNLATHYHAPTQTPKTALPDPKWERIVKSSEVNHGHLQFAQELLPPIPEA*

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