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Report for Sequence Feature Glyma12g15285

Feature Type:gene_model
Chromosome:Gm12
Start:14056589
stop:14056996
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g15285
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G08520AT Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein | chr5:2755470-2757741 REVERSE LENGTH=298 SoyBaseE_val: 2.00E-47ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR25040Panther FAMILY NOT NAMED JGI ISS
PTHR25040:SF29Panther SUBFAMILY NOT NAMED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_D9ZJ76UniRef Annotation by Michelle Graham. Most informative UniRef hit: MYBR domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ76_MALDO SoyBaseE_val: 9.00E-65ISS
UniRef100_UPI000233CECBUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CECB related cluster n=1 Tax=unknown RepID=UPI000233CECB SoyBaseE_val: 1.00E-85ISS

Expression Patterns of Glyma12g15285
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g15285 not represented in the dataset
Glyma12g15285 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g15285 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma12g15285
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g15285
>Glyma12g15285.1   sequence type=CDS   gene model=Glyma12g15285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGATGAAGTTGGTAGTAGCTCTGAGTGGAGCACAGAACAGGATAAAGCATTTGAAAATGCCTTGGCAATTCATCCTGAGGATGCTTCAGACCGATGGGAGAAGATTGTGGCTGATATACCGGGGAAAACCTTGGAAGAGATTAAACACCACTATGAGCTCTTGGTTGAAGATGTTAACCAGATTGAATCTGGTTGTGTGCCTTTACCATCTTATAATTCTTCTCCAGAGGGCTCAACAAGCCATGCTAGTGATGAAGGAGCTGGCAAGAAGGGAGGCCACTCTTGGAATAGTAACAATGAATCTAATCATGGAACTAAGGCTTCAAGATCAGATAAGGAACGGCGAAAGGGTATTGCATGGACAGAGGATGAACACAGGTTAGTTTATCTTTGCTTCAATATTTAG
Predicted protein sequences of Glyma12g15285
>Glyma12g15285.1   sequence type=predicted peptide   gene model=Glyma12g15285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VDEVGSSSEWSTEQDKAFENALAIHPEDASDRWEKIVADIPGKTLEEIKHHYELLVEDVNQIESGCVPLPSYNSSPEGSTSHASDEGAGKKGGHSWNSNNESNHGTKASRSDKERRKGIAWTEDEHRLVYLCFNI*






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