Glyma12g15260 - SoyBase

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Report for Sequence Feature Glyma12g15260

Feature Type:	gene_model
Chromosome:	Gm12
Start:	14005705
stop:	14013705
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g15260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30000	AT	Annotation by Michelle Graham. TAIR10: alpha-mannosidase 3 \| chr1:10509532-10512320 REVERSE LENGTH=624	SoyBase	E_val: 3.00E-10	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0006491	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-glycan processing	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0004559	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-mannosidase activity	SoyBase	N/A	ISS
GO:0004571	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
PF02992	PFAM	Transposase family tnp2	JGI		ISS
UniRef100_C7FDI5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TNP2 n=1 Tax=Glycine max RepID=C7FDI5_SOYBN	SoyBase	E_val: 4.00E-82	ISS
UniRef100_I1LSG3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSG3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g15260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g15260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma12g15260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g15260

Limit To All Plant Sequences

>Glyma12g15260.1   sequence type=CDS   gene model=Glyma12g15260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCAAGGTTGGATGAAAAAACTACGCATAAGTGAGGAGTATGATAACAACGTTGAAGATTTCTTGCAATTTGCCCAACAAAATGCACCACACTTAGGGGGACTATATTTGTGTCCAGGTGTTAAATGTTTGAATGGCCAACGACAACCATTAGAAGACATTAGAACACATCTTATATGTGATGGTATCAGTCCTACTTATACAAAGTGGATATGGCATGGCGAGTTACCAAAAATGTCAACAGTCCCTCCGAGTCATGCAGTTGATGTAGAAGTCGGTGATCATATAGAAGACATGCTCCACGATCTTGGACAAGAGGGTTTTAGACAAGCACATGCACCTTGTTATGATACATTACAAGCTGATTCTAAGAAGCCACTGTATGTCGAATGTGCAAACTTCACACGGTTATCGGGGGTGTTAGCTTTGGTCAATTTGAAGGCAAGATTTGGGTGGAGCGACAAAAGCTTCAACGAATTACTTGTGTTATTGAAGAATATGCTTCCTATGGACAACACGTTACCTAAGAATCATTACGAGGCCAAGAAGATTTTATGTTATGTTGCTGGTCCAAGACAGCCAGGAAATGACAATGATGTGTATCTTGCTCCCTTGATTGAAGACCTGACAAAATTGTGGGTAGAAGGGGTTGAAGTGTATGATGCCAATGTTCAACAGAGCTTTAGTTTGTGGGCAATGATATTTTGCACCATAAACAACTTTCCAGCTTATGGGAATTTGAGTGGGTATAGTGTCAAAGGCCACCATGCATGTCCTATATGGTACAAGGATGAGCCTTTCATAATGGCAGCACAGGCTAGGCAGATGTTTTATGTTAAAGATCCTAGTGACCCAACATGGTCAGTTGTTCTACAGGGAAAAATTAGCGGTATCGTTGACCACATGTATGCTTCAACACTTGATGTTAACGACATGGCCACGTTATCCCCCCAAATGCCTTCCATAAATGCTGAAAATGAAGAAGACGATGTACATGCAAATCATAACGATCATGATGAAGGACTAATGTCAACACCCCCAGGAAGTTCCCCTCCACCTTCAGATGCTCCTTCGGGGAGTATGTCAAAGAAGACTAGAAAAAGTACCCACCTCAAAAAATTGACTTCCAGAAGCTTGGACCAGCCACGGCCTACTGTTAATGTCAACCCCACAACTGGTAGAGGATCAGGCCCTTATAAAGAAAAGGGCCATAGTTACATGGGGATAGTCGCACGGGAAAGAACCCCAATTGTACATTCTAGTTGGAAAGATGTCCCGGAGTCTCTAAAGACCATAATATGGGATGACATTATGGGTAAATTTGATATCCCTGAAGGATTAGCGGCACAGAAAAAGGTGATGTCAACGGTTGCCATCAGATGGAGGCAATTTAAGTCTTCCCTCACCAGTAAATATGTATATTTTGCAAATAATGGTGAGGACAAAGTTCATCCTTCTGTTAAGTATGGGCTAGAACCCGATGCTTGGGAACAATTTGCGAAGAGTCGGCAAACCCCGCATTGGCAGGATTCAGACAATAATGTGGCAAAACCGGTTCGACGTGTAGAGAAGTGCAATATAGGTGATGGACAAGATCCATTGGGAGAATTGATGAAGATCTTGTATGACGTGTACATGAAGCCAGTTCAATTGTTGTGGGATGGGACGAAATATGGCATTCCAAATGTTGAAGCATCCTTTTACATCACACATTATGATATAACTGAAATCATCTCATGTGACAAGTGTTTGAACATTTATGTCCTACAGTTGTGGATGATTACAAGCAGAGGGAATGGTTCAGTGTATGGGTTCCTTGAGCCTCAGTGTATACACAATGCTAGGTATAGACGTCAAGCATGTCAAGATTACATTGAAAAGTGGGGCACATTGGCAACTCTTTGTTCTGTGTTCAAAGCTATGCCTGATCAACCTGCTCCTAGGTGGATTAAACCAAAGAGTCATGTTCAAAGCAAATCCTATGAGTGTGGATATTATGTGATGCATTGGATGTGGTGCATAGTTACTGGCGCTAACACACTAGGCTCTTTTTGCGGACCAGTTTGCCCTTTTTCCAAGTTGGGTGGAAGAATGTTGGACTACTTGACCAAATTGGATTGGGACAATCATTGTGTTTCTTTGAAGGGACCAGTCAGTAAAACTTCTCTGCCTAATATAGTAGCCGACAAAGGGAACTTTACCAAGATTGCTGCATTGCTAAGCACCACTATTGTGCCACCTCATTCCTTATTTGGTCACAAAATCCTTCAGGTGTGTTTCCTACCTGGTACACTTGCTATTGGTGCCACTAAAGGCCTTACAAAGAAACAGGCAATGAAAAACAATATGCTGAACTTTGAAGACCTACAATATTTGAAGGAATTATATCATCAGTTGCATGCCTTAGACAGATTTGATCAACATTATCGGCGCAAGCTTCAAGAACAGGACAATTCAAATGCTACAGAAAGAGTATACAATCTGATTGTTGTATCTAATGGTGATGGAAAAGCTAGTAGACATCATCCATTTTCTATACTTGGAGATAGATACATCAAGCATTTGGTAGTTGTGGTTAATGAACCGGACTCAGGCATTTATACTCCTAGGGACACTGTGCCTAACACTGAGGAGCTGATCGAGGATCCAGAAGTCTGA

Predicted protein sequences of Glyma12g15260

Limit To All Plant Sequences

>Glyma12g15260.1   sequence type=predicted peptide   gene model=Glyma12g15260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQGWMKKLRISEEYDNNVEDFLQFAQQNAPHLGGLYLCPGVKCLNGQRQPLEDIRTHLICDGISPTYTKWIWHGELPKMSTVPPSHAVDVEVGDHIEDMLHDLGQEGFRQAHAPCYDTLQADSKKPLYVECANFTRLSGVLALVNLKARFGWSDKSFNELLVLLKNMLPMDNTLPKNHYEAKKILCYVAGPRQPGNDNDVYLAPLIEDLTKLWVEGVEVYDANVQQSFSLWAMIFCTINNFPAYGNLSGYSVKGHHACPIWYKDEPFIMAAQARQMFYVKDPSDPTWSVVLQGKISGIVDHMYASTLDVNDMATLSPQMPSINAENEEDDVHANHNDHDEGLMSTPPGSSPPPSDAPSGSMSKKTRKSTHLKKLTSRSLDQPRPTVNVNPTTGRGSGPYKEKGHSYMGIVARERTPIVHSSWKDVPESLKTIIWDDIMGKFDIPEGLAAQKKVMSTVAIRWRQFKSSLTSKYVYFANNGEDKVHPSVKYGLEPDAWEQFAKSRQTPHWQDSDNNVAKPVRRVEKCNIGDGQDPLGELMKILYDVYMKPVQLLWDGTKYGIPNVEASFYITHYDITEIISCDKCLNIYVLQLWMITSRGNGSVYGFLEPQCIHNARYRRQACQDYIEKWGTLATLCSVFKAMPDQPAPRWIKPKSHVQSKSYECGYYVMHWMWCIVTGANTLGSFCGPVCPFSKLGGRMLDYLTKLDWDNHCVSLKGPVSKTSLPNIVADKGNFTKIAALLSTTIVPPHSLFGHKILQVCFLPGTLAIGATKGLTKKQAMKNNMLNFEDLQYLKELYHQLHALDRFDQHYRRKLQEQDNSNATERVYNLIVVSNGDGKASRHHPFSILGDRYIKHLVVVVNEPDSGIYTPRDTVPNTEELIEDPEV*

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