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Report for Sequence Feature Glyma12g14990

Feature Type:gene_model
Chromosome:Gm12
Start:13761492
stop:13761978
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g14990
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38840AT Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99 SoyBaseE_val: 5.00E-33ISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF02519PFAM Auxin responsive protein JGI ISS
UniRef100_P32295UniRef Annotation by Michelle Graham. Most informative UniRef hit: Indole-3-acetic acid-induced protein ARG7 n=1 Tax=Vigna radiata var. radiata RepID=ARG7_VIGRR SoyBaseE_val: 2.00E-48ISS
UniRef100_UPI000189D09BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D09B related cluster n=1 Tax=unknown RepID=UPI000189D09B SoyBaseE_val: 2.00E-60ISS

Expression Patterns of Glyma12g14990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g14990 not represented in the dataset
Glyma12g14990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g14990 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g126600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g14990
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g14990
>Glyma12g14990.1   sequence type=CDS   gene model=Glyma12g14990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTTCATTTGCCTGGTATCAGAAAGGCATTGTTTGCAGTGAATCAAGCATCTTCAAAAGCCATTCATGTGCCAAAGGGCTATCTTGCAGTATATGTCGGAGAGAACATGAAGCGGTTTGTGATCCCTGTGTCATACTTGAACCAACCTTCCTTCCAAGACTTGTTGAGTCAAGCTGAGGAAGAATTTGGGTATGATCATCCCATGGGTGGCCTTGCAATTCCTTGCAGCGAAGATGTTTTCCAATGTATAACTTCTTGCTTGAATTGA
Predicted protein sequences of Glyma12g14990
>Glyma12g14990.1   sequence type=predicted peptide   gene model=Glyma12g14990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFHLPGIRKALFAVNQASSKAIHVPKGYLAVYVGENMKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLAIPCSEDVFQCITSCLN*






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