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Report for Sequence Feature Glyma12g14420

Feature Type:gene_model
Chromosome:Gm12
Start:13387252
stop:13391592
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g14420
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58610AT Annotation by Michelle Graham. TAIR10: ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD LENGTH=591 SoyBaseE_val: 0ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006164GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009082GO-bp Annotation by Michelle Graham. GO Biological Process: branched-chain amino acid biosynthetic process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004455GO-mf Annotation by Michelle Graham. GO Molecular Function: ketol-acid reductoisomerase activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016616GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
PTHR21371Panther FAMILY NOT NAMED JGI ISS
PTHR21371:SF4Panther gb def: Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-a JGI ISS
PF01450PFAM Acetohydroxy acid isomeroreductase, catalytic domain JGI ISS
PF07991PFAM Acetohydroxy acid isomeroreductase, catalytic domain JGI ISS
UniRef100_D2DKE6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Acetohydroxyacid isomeroreductase n=1 Tax=Glycine max RepID=D2DKE6_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1LSB5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSB5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g14420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g14420
ParalogEvidenceComments
Glyma06g43546 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g14420 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g122900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g14420
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g14420
>Glyma12g14420.1   sequence type=CDS   gene model=Glyma12g14420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGCCACTGCTTCACTCTGCGCCACTTCCAGAACAACTTTCTCATCATCGAAGCCCGTCGCGAGAAGAAGCTGCTTCGTCGCGGTTCCCAAAATCGCGTTTCCCAAGCTCCGTTTCAAACCCGTCGCTATGGCTACGCTCGGCGCTCGCATGGTGGCCGCCGCACCCACCGTCACTCCGCCGGCCTCGCTCGACTTCGAAACCTCCGTTTTCAAGAAGGAGAAGATTAACCTCGCTGGACACGACGAGTACATCGTGAAAGGAGGGAGGGATTTGTTCCCTCTGTTGCAGGGTGCTTTCAAGGGGATTAAGCAGATTGGCGTCATTGGATGGGGTTCGCAGGGACCTGCTCAGGCACAGAATTTGCGGGACTCGCTTGCTGATGCAAAGTCTGATATTGTGGTCAAGGTTGGGCTCAGGAAAGGTTCTCGCTCCTTTAATGAGGCTCGCGCAGCTGGTTTTAGTGAGGAGAATGGAACTTTGGGTGACATATGGGAAACTATCTCAGGCAGTGATCTTGTGTTGCTCTTGATTTCTGATGCTGCACAGGCTGATAATTATGAAAAAATATTTTCCCACATGAAACCAAATAGCATACTGGGTCTGTCCCATGGTTTTCTTCTTGGGCATTTACAGTCAATAGGACTTGATTTTCCCAAGCACTTCAGTGTAATTGCTGTCTGCCCGAAAGGTATGGGTCCTTCTGTCAGGAGGCTGTATGTCCAAGGCAAAGAGATAAATGGTGCTGGAATTAATTCGAGTTTTGCAGTCCACCAGGATGTGGATGGCAGAGCTACTGATGTTGCTTTGGCATGGTCTGTTGCCCTTGGTTCGCCTTTTACATTTGCAACTTCGTTAGAGATGGAATACAGGAGTGACATCTTTGGGGAGAGAGGCATTTTACTTGGTGCTGTTCATGGTATTGTGGAATCCTTGTTTAGGAGGTACACTGAACATGGAATGAGTGAAGATTTGGCCTATAACAACACTGTCGAGTCCATTACAGGAACTATATCTAAAATAATCTCGACTAAGGGTATGTTGGCTGTATACAATGCTTTATCTGAAGATGAAAAGAGGGAATTTGAGAAAGCATATAGTGCTTCATATTATCCATGCATGGACATTTTGTATGAGTGCTATGAGGATATTGCTGCTGGAAGTGAGATTCGCAGTGTTGTCTTGGCTGGGCGGCGCTTTTATGAGAAAGAGGGTCTGCCTGCATTTCCCATGGGTAAAATTGATCAGACCCGGATGTGGAAGGTTGGTGAGCGTGTCCGTTCTACAAGGCCAGCTGGTGATCTAGGTCCATTATACCCATTTACTGCTGGGGTCTACGTGGCATTGATGATGGCCCAGATTGAGATCCTGAGGAAGAAGGGGCATTCTTACTCTGAAATTATTAACGAGAGTGTCATTGAGTCTGTTGATTCTTTGAATCCTTTCATGCATGCTCGTGGTGTTTCATTCATGGTTGATAACTGTTCAACTACGGCAAGGTTGGGTTCAAGGAAATGGGCTCCCCGATTTGATTACATCCTAACCCAGCAGGCCTTGGTGGCTGTGGACAATGGAGCACCTATCAACCAGGACCTAATCAGTAACTTCCTGTCAGACCAAGTGCATGGAGCCATTGAAGTTTGTGCTCAACTGAGACCTACAGTAGACATTTCTGTGCCACCAGATGCAGACTTTGTCCGTCCCGAGTTGCGTCAGTCTAGCAATTAG
Predicted protein sequences of Glyma12g14420
>Glyma12g14420.1   sequence type=predicted peptide   gene model=Glyma12g14420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSATASLCATSRTTFSSSKPVARRSCFVAVPKIAFPKLRFKPVAMATLGARMVAAAPTVTPPASLDFETSVFKKEKINLAGHDEYIVKGGRDLFPLLQGAFKGIKQIGVIGWGSQGPAQAQNLRDSLADAKSDIVVKVGLRKGSRSFNEARAAGFSEENGTLGDIWETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSIGLDFPKHFSVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALAWSVALGSPFTFATSLEMEYRSDIFGERGILLGAVHGIVESLFRRYTEHGMSEDLAYNNTVESITGTISKIISTKGMLAVYNALSEDEKREFEKAYSASYYPCMDILYECYEDIAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNGAPINQDLISNFLSDQVHGAIEVCAQLRPTVDISVPPDADFVRPELRQSSN*






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