Report for Sequence Feature Glyma12g14360
Feature Type: gene_model
Chromosome: Gm12
Start: 13315077
stop: 13320905
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g14360
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
PTHR10108 Panther
METHYLTRANSFERASE
JGI ISS
PTHR10108:SF275 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF08241 PFAM
Methyltransferase domain
JGI ISS
UniRef100_G7JCJ7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Menaquinone biosynthesis methyltransferase ubiE n=1 Tax=Medicago truncatula RepID=G7JCJ7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LSB3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSB3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g14360
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g14360
Paralog Evidence Comments
Glyma06g43590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g14360 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g122700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g14360
Coding sequences of Glyma12g14360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g14360.1 sequence type=CDS gene model=Glyma12g14360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCTGTCGTCGCCACTTCAGAACCTCTCTGCACTGATCTCTGCCAGCGGCAATGCCACAACAGCTACAGCACGGCCTCCGAGAGGGCGGCCCTGGGCGGTTCACGCGGCGTCGTCGGACACTACCACCGCCGCGCAAGCGCAGTTGGGTAGGTACGAAGAAGGGAAGCTGGAGCGACCCAAGTGGGTTGGGGAGACCCCTCTTTCACGTCTCGTTCAAGCTCTCATCTCCTTCAAGCCCTTGTTCTCTGTCCTCAAGCTTGGTGCTAGAAGGGCTTTGATAAGTACAGCTGAGAAGAACAATATACCTTGGAGGAAAATGGCACAAGAGATTTTAGAGTCAGAAGTGTATAGGGAGCTGGAGAGCATTCAAAACCAGTCTTTAGTGTATCCTGATTATTATTTGAATCCATTTCATGCATATGAAGAGGGAAATCTTACATGGCTGGCAGCAGCAGAAGCAGAGGCTGCTACAATGTCAATGGCCAGACGAGCACTTCCTGATGCTTCTTCAATACAGGAAGCAAATCAGATACTGCGTGGCAATTGGCTTCATGCAATTGAACAACACCATATGCAGTATTCAGAATCATGTGTGATCGATGACATTCTAGATATTGGATGCTCTGTAGGTATAAGCACAAGATATCTTGCAGACAAGTTCCCCACAGCCAAAGTCACCGGACTTGATCTGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGAGCAATGCCTAGAAAATTTCCTATAAAATGGATACATGCAAATGGGGAAGACACAGGCTTGCCTTCTAAATCGTTTGATCTTGTCTCTATTGCTTTTGTGCTTCATGAATGTCCTACAAGAGTTATAGTGAATTTGGTAAGAGAGGCATTCCGTCTCCTTCGGCCCGGTGGCACACTAGCTTTGACAGATTTTTCGCTGAAGTCAAAGGTCCTTCAGGAATTGTCTCCGGTTCTTTTTACATTGGTTAAGAGCACGGAACCCTTTCTGGATGAGTACTACTTGACTGATATGGATGAAACACTTAGGGAAGCTGGTTTTGTGAACATAACATCAATTCTTACGGACCCCAGACACGTGACAATTACAGCAACAGTGCCTCAATGA
Predicted protein sequences of Glyma12g14360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g14360.1 sequence type=predicted peptide gene model=Glyma12g14360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALSSPLQNLSALISASGNATTATARPPRGRPWAVHAASSDTTTAAQAQLGRYEEGKLERPKWVGETPLSRLVQALISFKPLFSVLKLGARRALISTAEKNNIPWRKMAQEILESEVYRELESIQNQSLVYPDYYLNPFHAYEEGNLTWLAAAEAEAATMSMARRALPDASSIQEANQILRGNWLHAIEQHHMQYSESCVIDDILDIGCSVGISTRYLADKFPTAKVTGLDLSPYFLAVAQHKEKRAMPRKFPIKWIHANGEDTGLPSKSFDLVSIAFVLHECPTRVIVNLVREAFRLLRPGGTLALTDFSLKSKVLQELSPVLFTLVKSTEPFLDEYYLTDMDETLREAGFVNITSILTDPRHVTITATVPQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
