Glyma12g14350 - SoyBase

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Report for Sequence Feature Glyma12g14350

Feature Type:	gene_model
Chromosome:	Gm12
Start:	13271493
stop:	13276804
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g14350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31130	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). \| chr2:13263829-13265534 REVERSE LENGTH=419	SoyBase	E_val: 9.00E-22	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1LSB1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LSB1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g14350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g14350

Paralog	Evidence	Comments
Glyma06g43610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g14350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g122400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g14350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g14350

Limit To All Plant Sequences

>Glyma12g14350.2   sequence type=transcript   gene model=Glyma12g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCCTCCTCGTACACTTCTCCACACAAGTCGCAATTCCTCCCAAGTTTATCAAACTGTTCCCAAGCTTTTCGTGTTCGAATCTTCTTCTTCCTTTTTTGTCCCTTTGAAAAGCTAAGGAATTGCTGAATTGGGGTATTACATGAAACCTTCTGCAAGTGGTTCATAAGTTTCCTCTTCTCTGTTCTTCTTAGAACAAATAATCAAATAGAACCACCTTGAAGTTGAGACAAGAGTAATGGCAGCCCTATAGTAATTAGACAATATCAGGACAAATTACTATTCAAGAGATATTATGATCACTATGGATGTGAAAGGTATAAAATGGGTTGGAAATATGTACCAGAAATTTGAGAATATGTTCCTGGAGGTGGAAGACGTGATGTACGAGGATACAGTTAAATACATAGAGAATCAGATGCAAGCTGTTGGGGAAAGTGTTAAAAAGTTATATTCAGAAATTGTGGGAGATTTACTTCCCCCAGAAAAGGTAGGCATTGAATTGCCTATAGATAAGCGTGCGGATGCTGGGCTCTGTAGGAAGCCATTCCATGTATATAAGGAAAGACATGCAAAAGCTGATACCAAGCAAAGAACTGAGGATTCAAGGATTGTTCATGGTGTTGATAATGTTGCAACACTTGCTGCTTTATATGATGGAACTTCCAAGGCTGATGCTTCATCCATGTTATCTTTGAGAAATTCTGTCAAAGAAGGAAAATTTAGTTCACCTTCAAGACAGTATGTTCGAAGAATGGATGTTAAATCAAACGTTCGTATTGATGAAAATCCAGTAAATAAGAAAATGGATGCGACCAAGATAATCAACAAAACCAATTTGGCAGAAACAGATGCATGCAGGACATCACAATCTTATGAGATCTCAAACAAAAATCAAAATCAGAATCATGGAGTTACTATTGCAAAGCCAGCTTCAGAAGAAGTGGCAAGGCTTGCCTCTGACACACACTGTTCTAATGAAATTGAAAATTCTTGTACCAAACAGTTCCCCAATGTTCCACTACTACTTAAATCAGCTGAAGAGAAACCGGTTGATACAATTTCTTCTTCCTCTTGTGCCCCATTTGGAGAGCCAGTTGTTTGATACTGTTTTAGAACAAGGCCATGAAACCATGCAAGAAGATCATCTGAAGCTTGAGGAAGCCTGTGTTATGGTGAATGGAGATGAAATTCAATTACCTCCCAAAGAAGGTGGTAATTTAAATACTAAAAAGAAAAAGGCACGGCAAACCTTTTCTTTGTCTAAGAAGTCTGCAAGAAAGCAAGAGTATAAGGAGCTTGTAGCATGGCATATGAACAGTGAAAAAGTAAAGGGAGATTGCATGAAGAATTTAGATCCAACTTTACCACAAGAACAAAACAAATTACTGCTTCCTAGTATGTCTGAACCAGAATGGGAGCTTCTCTAATTCTAAATGCCAGGATGATCAAGTTGTGTTGATACACAAAAGCCAATCCTACAAGTTTGGATTCACTCATAAGTCCTTGTGGAGATTAAGATGCCCAACTGGAAATTTAAGATGCTGAAATGATATAAATTCATACAATACTTATGCTATCTTTAGTTCTTTCCTAGCTCCTGAACTTTCCTACACAACCTTTTTCTTTTTCCTGCTCACAGAAAATAGAAAAGGGTAGCTGTAATTAGGCCATTGAAATGAGAATGTCTAATAGAATAAATGAAACTGTTATCTATTTTACAAATACTGAACGTTTTTATTTACATATTCTCCAC

>Glyma12g14350.3   sequence type=transcript   gene model=Glyma12g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTAGAACTCAACCAACCGATAACCGATTAGAACCTTACATTTTTATCTCACAATTATCTAAATATAAAATAAGAATATTTAAAAGAACTCTTGGAATAAAATGAGAATGCGTACTACAATCACGTAGAACATCATAGGCATGAAGAGTACACGTGTGCAAGGTAGGGTCATCCGAAGCTGAATCTTTAGTGTGTACGTTTCCTTATTCTGTTCCTCCTCGTACACTTCTCCACACAAGTCGCAATTCCTCCCAAGTTTATCAAACTGTTCCCAAGCTTTTCGTGTTCGAATCTTCTTCTTCCTTTTTTGTCCCTTTGAAAAGCTAAGGAATTGCTGAATTGGGATAATCAAATAGAACCACCTTGAAGTTGAGACAAGAGTAATGGCAGCCCTATAGTAATTAGACAATATCAGGACAAATTACTATTCAAGAGATATTATGATCACTATGGATGTGAAAGGTATAAAATGGGTTGGAAATATGTACCAGAAATTTGAGAATATGTTCCTGGAGGTGGAAGACGTGATGTACGAGGATACAGTTAAATACATAGAGAATCAGATGCAAGCTGTTGGGGAAAGTGTTAAAAAGTTATATTCAGAAATTGTGGGAGATTTACTTCCCCCAGAAAAGGTAGGCATTGAATTGCCTATAGATAAGCGTGCGGATGCTGGGCTCTGTAGGAAGCCATTCCATGTATATAAGGAAAGACATGCAAAAGCTGATACCAAGCAAAGAACTGAGGATTCAAGGATTGTTCATGGTGTTGATAATGTTGCAACACTTGCTGCTTTATATGATGGAACTTCCAAGGCTGATGCTTCATCCATGTTATCTTTGAGAAATTCTGTCAAAGAAGGAAAATTTAGTTCACCTTCAAGACAGTATGTTCGAAGAATGGATGTTAAATCAAACGTTCGTATTGATGAAAATCCAGTAAATAAGAAAATGGATGCGACCAAGATAATCAACAAAACCAATTTGGCAGAAACAGATGCATGCAGGACATCACAATCTTATGAGATCTCAAACAAAAATCAAAATCAGAATCATGGAGTTACTATTGCAAAGCCAGCTTCAGAAGAAGTGGCAAGGCTTGCCTCTGACACACACTGTTCTAATGAAATTGAAAATTCTTGTACCAAACAGTTCCCCAATGTTCCACTACTACTTAAATCAGCTGAAGAGAAACCGGTTGATACAATTTCTTCTTCCTCTTGTGCCCCATTTGGAGAGCCAGTTGAACAAGGCCATGAAACCATGCAAGAAGATCATCTGAAGCTTGAGGAAGCCTGTGTTATGGTGAATGGAGATGAAATTCAATTACCTCCCAAAGAAGGTGGTAATTTAAATACTAAAAAGAAAAAGGCACGGCAAACCTTTTCTTTGTCTAAGAAGTCTGCAAGAAAGCAAGAGTATAAGGAGCTTGTAGCATGGCATATGAACAGTGAAAAAGTAAAGGGAGATTGCATGAAGAATTTAGATCCAACTTTACCACAAGAACAAAACAAATTACTGCTTCCTAGTATGTCTGAACCAGAATGGGAGCTTCTCTAATTCTAAATGCCAGGATGATCAAGTTGTGTTGATACACAAAAGCCAATCCTACAAGTTTGGATTCACTCATAAGTCCTTGTGGAGATTAAGATGCCCAACTGGAAATTTAAGATGCTGAAATGATATAAATTCATACAATACTTATGCTATCTTTAGTTCTTTCCTAGCTCCTGAACTTTCCTACACAACCTTTTTCTTTTTCCTGCTCACAGAAAATAGAAAAGGGTAGCTGTAATTAGGCCATTGAAATGAGAATGTCTAATAGAATAAATGAAACTGTTATCTATTTTACAAATACTGAACGTTTTTATTTACATATTCTCCACTTATTGCCTTGCCATTGTCAATGACACGCCCTTTCTGATCGATTTATGTTAAATGGATTTTTTTGGTTGAG

Coding sequences of Glyma12g14350

Limit To All Plant Sequences

>Glyma12g14350.1   sequence type=CDS   gene model=Glyma12g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCACTATGGATGTGAAAGGTATAAAATGGGTTGGAAATATGTACCAGAAATTTGAGAATATGTTCCTGGAGGTGGAAGACGTGATGTACGAGGATACAGTTAAATACATAGAGAATCAGATGCAAGCTGTTGGGGAAAGTGTTAAAAAGTTATATTCAGAAATTGTGGGAGATTTACTTCCCCCAGAAAAGGTAGGCATTGAATTGCCTATAGATAAGCGTGCGGATGCTGGGCTCTGTAGGAAGCCATTCCATGTATATAAGGAAAGACATGCAAAAGCTGATACCAAGCAAAGAACTGAGGATTCAAGGATTGTTCATGGTGTTGATAATGTTGCAACACTTGCTGCTTTATATGATGGAACTTCCAAGGCTGATGCTTCATCCATGTTATCTTTGAGAAATTCTGTCAAAGAAGGAAAATTTAGTTCACCTTCAAGACAGTATGTTCGAAGAATGGATGTTAAATCAAACGTTCGTATTGATGAAAATCCAGTAAATAAGAAAATGGATGCGACCAAGATAATCAACAAAACCAATTTGGCAGAAACAGATGCATGCAGGACATCACAATCTTATGAGATCTCAAACAAAAATCAAAATCAGAATCATGGAGTTACTATTGCAAAGCCAGCTTCAGAAGAAGTGGCAAGGCTTGCCTCTGACACACACTGTTCTAATGAAATTGAAAATTCTTGTACCAAACAGTTCCCCAATGTTCCACTACTACTTAAATCAGCTGAAGAGAAACCGGTTGATACAATTTCTTCTTCCTCTTGTGCCCCATTTGGAGAGCCAGTTGAACAAGGCCATGAAACCATGCAAGAAGATCATCTGAAGCTTGAGGAAGCCTGTGTTATGGTGAATGGAGATGAAATTCAATTACCTCCCAAAGAAGGTGGTAATTTAAATACTAAAAAGAAAAAGGCACGGCAAACCTTTTCTTTGTCTAAGAAGTCTGCAAGAAAGCAAGAGTATAAGGAGCTTGTAGCATGGCATATGAACAGTGAAAAAGTAAAGGGAGATTGCATGAAGAATTTAGATCCAACTTTACCACAAGAACAAAACAAATTACTGCTTCCTAGTATGTCTGAACCAGAATGGGAGCTTCTCTAA

>Glyma12g14350.2   sequence type=CDS   gene model=Glyma12g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCACTATGGATGTGAAAGGTATAAAATGGGTTGGAAATATGTACCAGAAATTTGAGAATATGTTCCTGGAGGTGGAAGACGTGATGTACGAGGATACAGTTAAATACATAGAGAATCAGATGCAAGCTGTTGGGGAAAGTGTTAAAAAGTTATATTCAGAAATTGTGGGAGATTTACTTCCCCCAGAAAAGGTAGGCATTGAATTGCCTATAGATAAGCGTGCGGATGCTGGGCTCTGTAGGAAGCCATTCCATGTATATAAGGAAAGACATGCAAAAGCTGATACCAAGCAAAGAACTGAGGATTCAAGGATTGTTCATGGTGTTGATAATGTTGCAACACTTGCTGCTTTATATGATGGAACTTCCAAGGCTGATGCTTCATCCATGTTATCTTTGAGAAATTCTGTCAAAGAAGGAAAATTTAGTTCACCTTCAAGACAGTATGTTCGAAGAATGGATGTTAAATCAAACGTTCGTATTGATGAAAATCCAGTAAATAAGAAAATGGATGCGACCAAGATAATCAACAAAACCAATTTGGCAGAAACAGATGCATGCAGGACATCACAATCTTATGAGATCTCAAACAAAAATCAAAATCAGAATCATGGAGTTACTATTGCAAAGCCAGCTTCAGAAGAAGTGGCAAGGCTTGCCTCTGACACACACTGTTCTAATGAAATTGAAAATTCTTGTACCAAACAGTTCCCCAATGTTCCACTACTACTTAAATCAGCTGAAGAGAAACCGGTTGATACAATTTCTTCTTCCTCTTGTGCCCCATTTGGAGAGCCAGTTGTTTGA

>Glyma12g14350.3   sequence type=CDS   gene model=Glyma12g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCACTATGGATGTGAAAGGTATAAAATGGGTTGGAAATATGTACCAGAAATTTGAGAATATGTTCCTGGAGGTGGAAGACGTGATGTACGAGGATACAGTTAAATACATAGAGAATCAGATGCAAGCTGTTGGGGAAAGTGTTAAAAAGTTATATTCAGAAATTGTGGGAGATTTACTTCCCCCAGAAAAGGTAGGCATTGAATTGCCTATAGATAAGCGTGCGGATGCTGGGCTCTGTAGGAAGCCATTCCATGTATATAAGGAAAGACATGCAAAAGCTGATACCAAGCAAAGAACTGAGGATTCAAGGATTGTTCATGGTGTTGATAATGTTGCAACACTTGCTGCTTTATATGATGGAACTTCCAAGGCTGATGCTTCATCCATGTTATCTTTGAGAAATTCTGTCAAAGAAGGAAAATTTAGTTCACCTTCAAGACAGTATGTTCGAAGAATGGATGTTAAATCAAACGTTCGTATTGATGAAAATCCAGTAAATAAGAAAATGGATGCGACCAAGATAATCAACAAAACCAATTTGGCAGAAACAGATGCATGCAGGACATCACAATCTTATGAGATCTCAAACAAAAATCAAAATCAGAATCATGGAGTTACTATTGCAAAGCCAGCTTCAGAAGAAGTGGCAAGGCTTGCCTCTGACACACACTGTTCTAATGAAATTGAAAATTCTTGTACCAAACAGTTCCCCAATGTTCCACTACTACTTAAATCAGCTGAAGAGAAACCGGTTGATACAATTTCTTCTTCCTCTTGTGCCCCATTTGGAGAGCCAGTTGAACAAGGCCATGAAACCATGCAAGAAGATCATCTGAAGCTTGAGGAAGCCTGTGTTATGGTGAATGGAGATGAAATTCAATTACCTCCCAAAGAAGGTGGTAATTTAAATACTAAAAAGAAAAAGGCACGGCAAACCTTTTCTTTGTCTAAGAAGTCTGCAAGAAAGCAAGAGTATAAGGAGCTTGTAGCATGGCATATGAACAGTGAAAAAGTAAAGGGAGATTGCATGAAGAATTTAGATCCAACTTTACCACAAGAACAAAACAAATTACTGCTTCCTAGTATGTCTGAACCAGAATGGGAGCTTCTCTAA

Predicted protein sequences of Glyma12g14350

Limit To All Plant Sequences

>Glyma12g14350.1   sequence type=predicted peptide   gene model=Glyma12g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITMDVKGIKWVGNMYQKFENMFLEVEDVMYEDTVKYIENQMQAVGESVKKLYSEIVGDLLPPEKVGIELPIDKRADAGLCRKPFHVYKERHAKADTKQRTEDSRIVHGVDNVATLAALYDGTSKADASSMLSLRNSVKEGKFSSPSRQYVRRMDVKSNVRIDENPVNKKMDATKIINKTNLAETDACRTSQSYEISNKNQNQNHGVTIAKPASEEVARLASDTHCSNEIENSCTKQFPNVPLLLKSAEEKPVDTISSSSCAPFGEPVEQGHETMQEDHLKLEEACVMVNGDEIQLPPKEGGNLNTKKKKARQTFSLSKKSARKQEYKELVAWHMNSEKVKGDCMKNLDPTLPQEQNKLLLPSMSEPEWELL*

>Glyma12g14350.2   sequence type=predicted peptide   gene model=Glyma12g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITMDVKGIKWVGNMYQKFENMFLEVEDVMYEDTVKYIENQMQAVGESVKKLYSEIVGDLLPPEKVGIELPIDKRADAGLCRKPFHVYKERHAKADTKQRTEDSRIVHGVDNVATLAALYDGTSKADASSMLSLRNSVKEGKFSSPSRQYVRRMDVKSNVRIDENPVNKKMDATKIINKTNLAETDACRTSQSYEISNKNQNQNHGVTIAKPASEEVARLASDTHCSNEIENSCTKQFPNVPLLLKSAEEKPVDTISSSSCAPFGEPVV*

>Glyma12g14350.3   sequence type=predicted peptide   gene model=Glyma12g14350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITMDVKGIKWVGNMYQKFENMFLEVEDVMYEDTVKYIENQMQAVGESVKKLYSEIVGDLLPPEKVGIELPIDKRADAGLCRKPFHVYKERHAKADTKQRTEDSRIVHGVDNVATLAALYDGTSKADASSMLSLRNSVKEGKFSSPSRQYVRRMDVKSNVRIDENPVNKKMDATKIINKTNLAETDACRTSQSYEISNKNQNQNHGVTIAKPASEEVARLASDTHCSNEIENSCTKQFPNVPLLLKSAEEKPVDTISSSSCAPFGEPVEQGHETMQEDHLKLEEACVMVNGDEIQLPPKEGGNLNTKKKKARQTFSLSKKSARKQEYKELVAWHMNSEKVKGDCMKNLDPTLPQEQNKLLLPSMSEPEWELL*

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