Report for Sequence Feature Glyma12g14230
Feature Type: gene_model
Chromosome: Gm12
Start: 13024439
stop: 13028481
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g14230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G38080 AT
Annotation by Michelle Graham. TAIR10: Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558
SoyBase E_val: 0 ISS
GO:0009809 GO-bp
Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process
SoyBase N/A ISS
GO:0009834 GO-bp
Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis
SoyBase N/A ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0046274 GO-bp
Annotation by Michelle Graham. GO Biological Process: lignin catabolic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0048046 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: apoplast
SoyBase N/A ISS
GO:0005507 GO-mf
Annotation by Michelle Graham. GO Molecular Function: copper ion binding
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0052716 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydroquinone:oxygen oxidoreductase activity
SoyBase N/A ISS
KOG1263
KOG
Multicopper oxidases
JGI ISS
PTHR11709 Panther
MULTI-COPPER OXIDASE
JGI ISS
PTHR11709:SF9 Panther
LACCASE
JGI ISS
PF00394 PFAM
Multicopper oxidase
JGI ISS
PF07731 PFAM
Multicopper oxidase
JGI ISS
PF07732 PFAM
Multicopper oxidase
JGI ISS
UniRef100_G7KE42 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Laccase 1a n=1 Tax=Medicago truncatula RepID=G7KE42_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LSA5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LSA5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g14230
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g14230
Paralog Evidence Comments
Glyma06g43701 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g14230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g121700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g14230
Coding sequences of Glyma12g14230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g14230.1 sequence type=CDS gene model=Glyma12g14230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCGTTTGGTATTCAAATCATGCTATTGCTGGCAGCTTTCTTGCTTCCACTATCTGTGGAAGCTATGGTTCGCCACTACAAGTTCAATGTGGTGCAAAAGAATACCACAAGATTGGGTTCAACCAAGCCCATTGTTACCATAAATGGAAAGTTCCCAGGTCCCACCATCTATGCAAGGGAAGATGACACTGTTCTGGTTAAGGTAGTCAACCAGGTCAAGTACAATGTCAGCATCCATTGGCATGGGGTGAGACAATTGAGAACAGGTTGGGCTGATGGGCCAGCATACATAACCCAGTGTCCAATTCTACCGAGCCAGGCCTATGTCTACAACTTTACTCTTACAGGCCAGAGAGGCACACTTTGGTGGCATGCACATATCCTCTGGCTTAGGGCCACTGTCCATGGTGCCTTGGTCATCTTGCCCAAGCTTGGAGTTCCTTACCCTTTTCCCAAACCAAATATGGAACAAGTTATCATATTGAGTGAATGGTGGAAATCAGATACTGAGGCTGTAATAAATGAAGCTTTGAAATCTGGTTTGGCTCCAAATGCCTCTGATGCTCACACAATCAACGGCCATCCAGGACCTATCCAAGGCTATGCTTCACAAGGAGGATATAAGTTGGATGTTCAACCAGGAAAGACCTACTTGCTAAGAATCATCAATGCTGCACTCAATGAAGAGCTCTTCTTTAAAATTGCTGGGCATGAACTCACTGTTGTTGAGGTTGATGCAGTTTACACAAAACCTTTGAAAACTGATACCATTGTCATAGCACCTGGCCAAACCACAAATGTGCTTCTAACAACCAAACATGCAACTGGCAAATACTTGGTTGCAGCCTCTCCTTTCATGGATGCTCCTATTGCAGTTGACAACAAGACTGCCACTGCCACTTTACACTATCTAGGCACCCTTGGTTCCACCATCACCACCCTCACTTCCATGCCTCCTAAAAATGCAACACCAGTTGCCACCACTTTCATCGACTCTCTCCGAAGCTTAAACTCCAAAGAGCATCCTGCTAGAGTCCCTTTAAAGATTGATCATAACTTGCTCTTCACAGTTAGCCTTGGTGTCAACCCTTGTGCTACTTGTGTGAATAATAGCAGGGTGGTAGCAGATATCAACAATGTTACCTTTGTGATGCCTAAAATTTCTCTTCTTCAAGCACATTTCTTCAAGATCAAGGGAGTTTTCACCGACGATTTCCCCGGAAATCCTCCTGTGGTGTATAACTTCACAGGGACACAACCATCAAATTTGAAGACCATGAAAGGCACAAGGGTCTATAGACTTGCTTACAATTCCACAGTTCAATTGGTCTTGCAAGATACTGGAATGATAACACCTGAGAACCATCCTATTCATCTCCATGGCTTCAACTTTTTTGTGGTTGGTAGGGGACAAGGGAATTTCAACCCCACAAAAGACCCCAAGAAATTTAACCTTGTAGATCCTGTGGAGAGAAATACAGTTGGAGTCCCGGCTGGGGGGTGGACTGCTATTAGATTCAGGGCTGACAATCCAGGTGTCTGGTTTATGCATTGCCACTTGGAAATTCATACAACATGGGGACTGAAGATGGCTTTTGTTGTGGACAACGGTAAAGGACCAAATGAATCTTTATTACCACCTCCAACTGACCTACCCAAGTGTTGA
Predicted protein sequences of Glyma12g14230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g14230.1 sequence type=predicted peptide gene model=Glyma12g14230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAFGIQIMLLLAAFLLPLSVEAMVRHYKFNVVQKNTTRLGSTKPIVTINGKFPGPTIYAREDDTVLVKVVNQVKYNVSIHWHGVRQLRTGWADGPAYITQCPILPSQAYVYNFTLTGQRGTLWWHAHILWLRATVHGALVILPKLGVPYPFPKPNMEQVIILSEWWKSDTEAVINEALKSGLAPNASDAHTINGHPGPIQGYASQGGYKLDVQPGKTYLLRIINAALNEELFFKIAGHELTVVEVDAVYTKPLKTDTIVIAPGQTTNVLLTTKHATGKYLVAASPFMDAPIAVDNKTATATLHYLGTLGSTITTLTSMPPKNATPVATTFIDSLRSLNSKEHPARVPLKIDHNLLFTVSLGVNPCATCVNNSRVVADINNVTFVMPKISLLQAHFFKIKGVFTDDFPGNPPVVYNFTGTQPSNLKTMKGTRVYRLAYNSTVQLVLQDTGMITPENHPIHLHGFNFFVVGRGQGNFNPTKDPKKFNLVDPVERNTVGVPAGGWTAIRFRADNPGVWFMHCHLEIHTTWGLKMAFVVDNGKGPNESLLPPPTDLPKC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
