Glyma12g13935 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma12g13935): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma12g13935): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma12g13935

Feature Type:	gene_model
Chromosome:	Gm12
Start:	12589989
stop:	12597053
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g13935

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39200	AT	Annotation by Michelle Graham. TAIR10: Seven transmembrane MLO family protein \| chr2:16356255-16359797 REVERSE LENGTH=576	SoyBase	E_val: 8.00E-149	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF03094	PFAM	Mlo family	JGI		ISS
UniRef100_G7JUX8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MLO-like protein n=1 Tax=Medicago truncatula RepID=G7JUX8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CD55	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CD55 related cluster n=1 Tax=unknown RepID=UPI000233CD55	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g13935

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g13935 not represented in the dataset	Glyma12g13935 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g13935

Paralog	Evidence	Comments
Glyma06g44023	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g13935 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g119300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g13935

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g13935

Limit To All Plant Sequences

>Glyma12g13935.2   sequence type=transcript   gene model=Glyma12g13935   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCCCACTTGAGCTTGGCACAGTTCTTTAGCAAATTCTCCTCCTTAATTTTGCCCTCACTTAACCATAGTATCATATATTATCATGCATATGTATGCATACTTACAATAACAAGAGGTGCATGCTCTCTTCTCTTGTCTCAAGATATACAAAGAATATCTTTGGCAGAAACTAAGGAAACTAACGAAGATCAAAGGCGATTATGGACATAGGAAAAGAAAGATCCCTTGAAGAAACGCCAACATGGGCTGTTTCAGTCTTTTGCTTCTTCTTTCTTATGATATCTTTGATCATTGAGGGTGGACTCCACAAATTATCTGAGATTTTGAGGAAAGGGAAAGGAAAATCGCTAGGGAAGGCTTTGACTAAAACCAAAACAGTGCCAATATCAAAAATCTGCATCAGCAAGGGTGTGGCAAATTCATTTCTCCCGTGTAAGGATGTTGTGGGCTTCACAGGATCAGCTACTCGTACTTCAACCTCAGGATTGGACGTAGCACCTGCTACCAATGAATCCACAATTGAAGTCAACTATTGTGAAGCAAAGGGCATGGTTAGTCTAATTTCAAGTGATGGAATCCTGCAGCTAAACATATTCATTTCCTTTTTGGCCGTGTTTCACATTTTGTTCTGCACATTGACAATGTGCCTTGGGAAGGCAAAGATGAGAAAATGGAAAAGATGGGAGGACGAGACTCAAACACTTGAATATCAGATAGCTAATGATCCAAGAAGGTTCCAGTATATAGGCCAAACATTGATTGGCAAGCGTCATTTGAAATTCTGGAGCTATCATTCTCCTTTGCTTTGGATGGTTTGCTTTATTAGGCAGTTCTATGGCTCAGTATCAAAAGATGATTACTTCACTCTACGAAATGGTTTCATTGCAGCTAATATTTCTTTAGGCTGCAATTTCAACTTCAAGAAATTTCTTTGTCGCACTTATGATGAAGATTTTGAGAAGGTTATGGGAATCAGGATTTGGATCTGGATTTTCTCCATACTTTTCATATTTTTTAGCGCACATGAGTTCTATAATTACTTCTGGCTTCCATTTATTCCGCTTGTGGTTGCTTTGCTTGCTGGGACAAAATTGCAAGTCATAATAACAAAGATGTGTGTGGATAGTTGCAAGGAAAAGCCAGTGATCAAAGGAAGTCTACTTGTAACACCTAGTGATGCTCATTTCTGGTTTCATCAACCTGAATGGCTTCTCCATTTACTCAAGTTCATCCTTATCCAGAACTCCTTTCAACTTGCATTCTTCACCTGGACTTGGTATGAATTTGGTCCAAGGTCTTGCTTCAATCGAAAAAGAGAGGACATTGGCATTAGGATTGTCATGGGTGTAGCTGTGCAGCTATTTTGTGGTTATGTGACACTGCCCCTTTATGCACTTGTTACTCAGATGGGTTCTAGCATGAGGAGAGAAATTTTCACTGAGAAGGTTTCTAGGGGGCTCAAAAACTGGCACAAAAGGGCTAAACAATCTCTGTCCAAAAAAAACTCAATTTCTAACAAACACTCAGATTCTTTGCATTCCAAAGAATGTGACAATTCAGTTAGAGCATCAGTGGATAGTGTGCACACCCCAGATAATGTAGTACTCACAAGCCCTCCTTTTCACATCACAAGTGGAGAAGAAGAAAAAGGCATTGCACCAACCACAAAGCAAGAGATATCGATTCACTCCACAACTGAAACAATTAAAACTACTGATGAGGAAGAGAATCCCAAGATCATCACCAGAGGAACCTATGACGGTGAGATCTCATTTGGGAGCAGCTGGAAGAATGTGGGAAGTAGCAGGGGCATTGGAGAAATTGGTTCAATAATTGAAGATGATGCTGAAAAATTGCCTAAGTTGATTCCATAGAGACTTTGTAATATTGATTTCAATGAAATTGTGTCTATAAGACATTTCTAAAAACTCTAGTCTCTTATATCTTATTAAAGTGTCAACATCAATCATATCACCTATCCTTAACCCTACCCTTTCTTCTGTCCCTGAATTGAAAAT

Coding sequences of Glyma12g13935

Limit To All Plant Sequences

>Glyma12g13935.1   sequence type=CDS   gene model=Glyma12g13935   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATAGGAAAAGAAAGATCCCTTGAAGAAACGCCAACATGGGCTGTTTCAGTCTTTTGCTTCTTCTTTCTTATGATATCTTTGATCATTGAGGGTGGACTCCACAAATTATCTGAGATTTTGAGGAAAGGGAAAGGAAAATCGCTAGGGAAGGCTTTGACTAAAACCAAAACAGAAATGATGAAATTCGGTTTCATGTCCTTTATTCTCACAATATCGGAAGTGCCAATATCAAAAATCTGCATCAGCAAGGGTGTGGCAAATTCATTTCTCCCGTGTAAGGATGTTGTGGGCTTCACAGGATCAGCTACTCGTACTTCAACCTCAGGATTGGACGTAGCACCTGCTACCAATGAATCCACAATTGAAGTCAACTATTGTGAAGCAAAGGGCATGGTTAGTCTAATTTCAAGTGATGGAATCCTGCAGCTAAACATATTCATTTCCTTTTTGGCCGTGTTTCACATTTTGTTCTGCACATTGACAATGTGCCTTGGGAAGGCAAAGATGAGAAAATGGAAAAGATGGGAGGACGAGACTCAAACACTTGAATATCAGATAGCTAATGATCCAAGAAGGTTCCAGTATATAGGCCAAACATTGATTGGCAAGCGTCATTTGAAATTCTGGAGCTATCATTCTCCTTTGCTTTGGATGGTTTGCTTTATTAGGCAGTTCTATGGCTCAGTATCAAAAGATGATTACTTCACTCTACGAAATGGTTTCATTGCAGCTAATATTTCTTTAGGCTGCAATTTCAACTTCAAGAAATTTCTTTGTCGCACTTATGATGAAGATTTTGAGAAGGTTATGGGAATCAGGATTTGGATCTGGATTTTCTCCATACTTTTCATATTTTTTAGCGCACATGAGTTCTATAATTACTTCTGGCTTCCATTTATTCCGCTTGTGGTTGCTTTGCTTGCTGGGACAAAATTGCAAGTCATAATAACAAAGATGTGTGTGGATAGTTGCAAGGAAAAGCCAGTGATCAAAGGAAGTCTACTTGTAACACCTAGTGATGCTCATTTCTGGTTTCATCAACCTGAATGGCTTCTCCATTTACTCAAGTTCATCCTTATCCAGAACTCCTTTCAACTTGCATTCTTCACCTGGACTTGGTATGAATTTGGTCCAAGGTCTTGCTTCAATCGAAAAAGAGAGGACATTGGCATTAGGATTGTCATGGGTGTAGCTGTGCAGCTATTTTGTGGTTATGTGACACTGCCCCTTTATGCACTTGTTACTCAGATGGGTTCTAGCATGAGGAGAGAAATTTTCACTGAGAAGGTTTCTAGGGGGCTCAAAAACTGGCACAAAAGGGCTAAACAATCTCTGTCCAAAAAAAACTCAATTTCTAACAAACACTCAGATTCTTTGCATTCCAAAGAATGTGACAATTCAGTTAGAGCATCAGTGGATAGTGTGCACACCCCAGATAATGTAGTACTCACAAGCCCTCCTTTTCACATCACAAGTGGAGAAGAAGAAAAAGGCATTGCACCAACCACAAAGCAAGAGATATCGATTCACTCCACAACTGAAACAATTAAAACTACTGATGAGGAAGAGAATCCCAAGATCATCACCAGAGGAACCTATGACGGTGAGATCTCATTTGGGAGCAGCTGGAAGAATGTGGGAAGTAGCAGGGGCATTGGAGAAATTGGTTCAATAATTGAAGATGATGCTGAAAAATTGCCTAAGTTGATTCCATAG

>Glyma12g13935.2   sequence type=CDS   gene model=Glyma12g13935   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATAGGAAAAGAAAGATCCCTTGAAGAAACGCCAACATGGGCTGTTTCAGTCTTTTGCTTCTTCTTTCTTATGATATCTTTGATCATTGAGGGTGGACTCCACAAATTATCTGAGATTTTGAGGAAAGGGAAAGGAAAATCGCTAGGGAAGGCTTTGACTAAAACCAAAACAGTGCCAATATCAAAAATCTGCATCAGCAAGGGTGTGGCAAATTCATTTCTCCCGTGTAAGGATGTTGTGGGCTTCACAGGATCAGCTACTCGTACTTCAACCTCAGGATTGGACGTAGCACCTGCTACCAATGAATCCACAATTGAAGTCAACTATTGTGAAGCAAAGGGCATGGTTAGTCTAATTTCAAGTGATGGAATCCTGCAGCTAAACATATTCATTTCCTTTTTGGCCGTGTTTCACATTTTGTTCTGCACATTGACAATGTGCCTTGGGAAGGCAAAGATGAGAAAATGGAAAAGATGGGAGGACGAGACTCAAACACTTGAATATCAGATAGCTAATGATCCAAGAAGGTTCCAGTATATAGGCCAAACATTGATTGGCAAGCGTCATTTGAAATTCTGGAGCTATCATTCTCCTTTGCTTTGGATGGTTTGCTTTATTAGGCAGTTCTATGGCTCAGTATCAAAAGATGATTACTTCACTCTACGAAATGGTTTCATTGCAGCTAATATTTCTTTAGGCTGCAATTTCAACTTCAAGAAATTTCTTTGTCGCACTTATGATGAAGATTTTGAGAAGGTTATGGGAATCAGGATTTGGATCTGGATTTTCTCCATACTTTTCATATTTTTTAGCGCACATGAGTTCTATAATTACTTCTGGCTTCCATTTATTCCGCTTGTGGTTGCTTTGCTTGCTGGGACAAAATTGCAAGTCATAATAACAAAGATGTGTGTGGATAGTTGCAAGGAAAAGCCAGTGATCAAAGGAAGTCTACTTGTAACACCTAGTGATGCTCATTTCTGGTTTCATCAACCTGAATGGCTTCTCCATTTACTCAAGTTCATCCTTATCCAGAACTCCTTTCAACTTGCATTCTTCACCTGGACTTGGTATGAATTTGGTCCAAGGTCTTGCTTCAATCGAAAAAGAGAGGACATTGGCATTAGGATTGTCATGGGTGTAGCTGTGCAGCTATTTTGTGGTTATGTGACACTGCCCCTTTATGCACTTGTTACTCAGATGGGTTCTAGCATGAGGAGAGAAATTTTCACTGAGAAGGTTTCTAGGGGGCTCAAAAACTGGCACAAAAGGGCTAAACAATCTCTGTCCAAAAAAAACTCAATTTCTAACAAACACTCAGATTCTTTGCATTCCAAAGAATGTGACAATTCAGTTAGAGCATCAGTGGATAGTGTGCACACCCCAGATAATGTAGTACTCACAAGCCCTCCTTTTCACATCACAAGTGGAGAAGAAGAAAAAGGCATTGCACCAACCACAAAGCAAGAGATATCGATTCACTCCACAACTGAAACAATTAAAACTACTGATGAGGAAGAGAATCCCAAGATCATCACCAGAGGAACCTATGACGGTGAGATCTCATTTGGGAGCAGCTGGAAGAATGTGGGAAGTAGCAGGGGCATTGGAGAAATTGGTTCAATAATTGAAGATGATGCTGAAAAATTGCCTAAGTTGATTCCATAG

Predicted protein sequences of Glyma12g13935

Limit To All Plant Sequences

>Glyma12g13935.1   sequence type=predicted peptide   gene model=Glyma12g13935   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIGKERSLEETPTWAVSVFCFFFLMISLIIEGGLHKLSEILRKGKGKSLGKALTKTKTEMMKFGFMSFILTISEVPISKICISKGVANSFLPCKDVVGFTGSATRTSTSGLDVAPATNESTIEVNYCEAKGMVSLISSDGILQLNIFISFLAVFHILFCTLTMCLGKAKMRKWKRWEDETQTLEYQIANDPRRFQYIGQTLIGKRHLKFWSYHSPLLWMVCFIRQFYGSVSKDDYFTLRNGFIAANISLGCNFNFKKFLCRTYDEDFEKVMGIRIWIWIFSILFIFFSAHEFYNYFWLPFIPLVVALLAGTKLQVIITKMCVDSCKEKPVIKGSLLVTPSDAHFWFHQPEWLLHLLKFILIQNSFQLAFFTWTWYEFGPRSCFNRKREDIGIRIVMGVAVQLFCGYVTLPLYALVTQMGSSMRREIFTEKVSRGLKNWHKRAKQSLSKKNSISNKHSDSLHSKECDNSVRASVDSVHTPDNVVLTSPPFHITSGEEEKGIAPTTKQEISIHSTTETIKTTDEEENPKIITRGTYDGEISFGSSWKNVGSSRGIGEIGSIIEDDAEKLPKLIP*

>Glyma12g13935.2   sequence type=predicted peptide   gene model=Glyma12g13935   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIGKERSLEETPTWAVSVFCFFFLMISLIIEGGLHKLSEILRKGKGKSLGKALTKTKTVPISKICISKGVANSFLPCKDVVGFTGSATRTSTSGLDVAPATNESTIEVNYCEAKGMVSLISSDGILQLNIFISFLAVFHILFCTLTMCLGKAKMRKWKRWEDETQTLEYQIANDPRRFQYIGQTLIGKRHLKFWSYHSPLLWMVCFIRQFYGSVSKDDYFTLRNGFIAANISLGCNFNFKKFLCRTYDEDFEKVMGIRIWIWIFSILFIFFSAHEFYNYFWLPFIPLVVALLAGTKLQVIITKMCVDSCKEKPVIKGSLLVTPSDAHFWFHQPEWLLHLLKFILIQNSFQLAFFTWTWYEFGPRSCFNRKREDIGIRIVMGVAVQLFCGYVTLPLYALVTQMGSSMRREIFTEKVSRGLKNWHKRAKQSLSKKNSISNKHSDSLHSKECDNSVRASVDSVHTPDNVVLTSPPFHITSGEEEKGIAPTTKQEISIHSTTETIKTTDEEENPKIITRGTYDGEISFGSSWKNVGSSRGIGEIGSIIEDDAEKLPKLIP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain