SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20580 | AT | Annotation by Michelle Graham. TAIR10: 26S proteasome regulatory subunit S2 1A | chr2:8859211-8864699 FORWARD LENGTH=891 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0030163 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein catabolic process | SoyBase | N/A | ISS |
| GO:0042176 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein catabolic process | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0000502 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0008540 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, base subcomplex | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0030234 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: enzyme regulator activity | SoyBase | N/A | ISS |
| GO:0043130 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin binding | SoyBase | N/A | ISS |
| KOG2005 | KOG | 26S proteasome regulatory complex, subunit RPN1/PSMD2 | JGI | ISS | |
| PTHR10943 | Panther | 26S PROTEASOME REGULATORY SUBUNIT | JGI | ISS | |
| PTHR10943:SF1 | Panther | 26S PROTEASOME REGULATORY SUBUNIT S | JGI | ISS | |
| PF01851 | PFAM | Proteasome/cyclosome repeat | JGI | ISS | |
| UniRef100_G7JTX3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=2 Tax=Medicago truncatula RepID=G7JTX3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LS70 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LS70_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g13410 not represented in the dataset |
Glyma12g13410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g44340 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g117600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g13410.1 sequence type=CDS gene model=Glyma12g13410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCCCGATCCTAATCGCGCCGGCACTAGCGCCAGCGCCAACGCCGCCAAAGACGACGCCGTCGCCAAAAAGAAGGTCGAAAACGAAGATCTGTCCGATGAGGATTTGGCGCTGAAGCAGCAATTGGAGTTGTACGTGGAAAGGGTTCAGGATCCTGACCAGGGATTGCAGAAGGTTGCACTCGAGAGCATGAGGCAAGAAATTCGAACTTCCACGAGCTCTATGACTTCGGTTCCTAAGCCGTTGAAGTTCCTTCGCCCTCATTATGGCACTCTTAAAACGTATTATGAAACTATGGCGGAGTCTGATTTGAAGAAGTACCTGGCGGATATATTGTCGGTTTTGGCACTCACAATGTCTGCCGAAGGCGAACGAGAAAGCCTCAAGTATAGACTATTGGGTTCTGAGGGTGACATTGGTTCCTGGGGCCACGAGTATGTTAGGAATCTGGCTGGAGAAATTGCTCAAGAATATGCAAAACGACAGAGTGAAGAGGCTCCCATAGATGATCTCATGGAACTTGTGCAACAAATTGTTGCTTTTCACATGAAGCATAATGCAGAACCTGAAGCTGTTGATCTTTTGATGGAGGTTGAAGATCTGGATATGTTGAGTGGACATGTTGACAAAACAAATTTTAAAAGGACTTGCCTATATCTCACCAGTTCAGCTAGATACCTCCCGGGACCAGATGATATGCTAGTTTTGGACATTGCATATTCAATCTATAAACAATTTGAAGAATATCCAAATGCACTCCAAATTGCATTGTTCATGGATAACATGCAGCACGTGAGGGAGGTGTTCACCTCTTGTAATGATGTGCTGCGGAAGAAGCAATTCTGTTACATGCTTGCACGTCATGGAATTACTTTTGAGCTTGATGAGAAGATGGTTTCAGACGATGAGGACAGAGAATTGTTGCAGGAAATCATAAACAATTCTAAGTTAAGTGAAGGATATCTCACCCTTGCTCGTGATATTGAGGTCATGGAGCCCAAGTCCCCTGAGGATATATACAAGGCACACTTGCTTGATGGCCGGGCTAGTGCTGGTGCAAGTGTTGACTCAGCTAGACAGAACCTTGCTGCAACTTTTGTTAATGCATTTGTAAATGCTGGCTTTGGTCAGGATAAATTAATGACTGTTCCAACAGATTCTTCAAGCAGTGCTTCTTCTGGAAATTGGCTTTTCAAAAATAAGGAACATGGGAAGACTAGTGCTGCAGCTAGTCTGGGTATGATTTTACTCTGGGATGTTGACTCGGGACTTGCTCAAATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGTGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTGCAATGGCACTTCTAGGTGACTATATAGATAAAGAAGACACTTCAACAAGGATTGGTGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAGTTACGTGAGAAATTGACAGGTGTACTGAATGATTCTAAAGCTTCACTTGAGGTGCTTGCTTTTGCTGCTATTTCTTTGGGCTTGATCTATGTGGGTTCTTGCAATGAAGAAATTGCTCAAGCAATTATATATACACTAATGGACCGGAGTGAGTCAGAGTTGGGAGAGCCCCTTACACGACTTTTACCTCTCGGTCTTGGTCTTCTATATCTTGGAAAGCAGGACAGTGTTGAGGCAACTGCCGAAGTTTCAAAGACTTTCAATGAAAAAATTAGAAAGTATTGTGACATGACACTACTATCATGTGCCTATGCTGGAACTGGAAATGTCCTCAAGGTTCAAAATCTGTTGGGTCATTGTTCACAACATCTTGATAAAGGTGAAACTCACCAGGGTCCTGCTGTGCTTGGAATTGCTATGGTAGCTATGGCTGAAGAATTAGGACTTGAGATGGCGATTCGATCATTAGAACATCTTCTACAATATGGAGAGCAGAATATTCGCCGAGCAGTTCCTTTGGCACTTGGTCTACTCTGTATATCAAATCCAAAGGTCAATGTTATGGATACCTTAAGCAGACTTAGCCATGATACTGATTCAGAAGTAGCTATGGCAGCTGTTATCTCCTTGGGTCTGATAGGTGCTGGAACGAACAATGCTCGAATTGCTGGCATGCTTCGCAATCTTTCTAGTTATTACTACAAGGATACCAGCCTTCTATTCTGTGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTTAATCCATATCATTCTGATCGCTTCTTACTGTCACCGACAGCACTTGCTGGATTAATTACCATGTTGCACGCATGCCTAGACATGAAAGCTATTGTGTTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCAATGCAGCCAAGGATGTTGTTGACTGTGGATGAGAACTTGAAGCCTCTATCAGTGCCTGTTCGTGTTGGACAAGCCGTAGATGTTGTTGGACAAGCAGGTCGTCCGAAAACAATCACTGGCTTTCAGACCCACTCCACCCCTGTTCTCCTGGCTGCTGGGGACAGGGCGGAGCTCGCAACGGAAAAATACATTCCCCTATCACCAATTCTTGAAGGTTTTGTAATATTGAAGGAGAATCCAGATTACAGGGAAGAGTGA
>Glyma12g13410.1 sequence type=predicted peptide gene model=Glyma12g13410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPDPNRAGTSASANAAKDDAVAKKKVENEDLSDEDLALKQQLELYVERVQDPDQGLQKVALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKTYYETMAESDLKKYLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQSEEAPIDDLMELVQQIVAFHMKHNAEPEAVDLLMEVEDLDMLSGHVDKTNFKRTCLYLTSSARYLPGPDDMLVLDIAYSIYKQFEEYPNALQIALFMDNMQHVREVFTSCNDVLRKKQFCYMLARHGITFELDEKMVSDDEDRELLQEIINNSKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPTDSSSSASSGNWLFKNKEHGKTSAAASLGMILLWDVDSGLAQIDKYFHSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDYIDKEDTSTRIGAIMGLGIAYAGSQNEQLREKLTGVLNDSKASLEVLAFAAISLGLIYVGSCNEEIAQAIIYTLMDRSESELGEPLTRLLPLGLGLLYLGKQDSVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCSQHLDKGETHQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKDTSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSPTALAGLITMLHACLDMKAIVLGKYHYVLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYREE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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