Glyma12g13390 - SoyBase

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Report for Sequence Feature Glyma12g13390

Feature Type:	gene_model
Chromosome:	Gm12
Start:	11827582
stop:	11830570
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g13390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33847	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:14320168-14320522 REVERSE LENGTH=89	SoyBase	E_val: 2.00E-18	ISS
UniRef100_B3H5P1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclear fusion defective 6 n=1 Tax=Arabidopsis thaliana RepID=B3H5P1_ARATH	SoyBase	E_val: 1.00E-12	ISS
UniRef100_I1LS69	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LS69_SOYBN	SoyBase	E_val: 9.00E-56	ISS

Expression Patterns of Glyma12g13390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g13390 not represented in the dataset	Glyma12g13390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g13390

Paralog	Evidence	Comments
Glyma06g44351	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g13390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g117500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g13390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g13390

Limit To All Plant Sequences

>Glyma12g13390.3   sequence type=transcript   gene model=Glyma12g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCAACGATGGTAGTTTCAACTTTCAACGACACAAGGGTCAGGGTTTTAACTACGCAAAACCCTACGCCGATCCCGAACGATTCCGATCCAGAAAATGGCATCCGCCGCCGCCAGATCTATATTCCGATCATGCTCCGCCCCCAGGTCAGCGTTTCGCGTCGCATCGGAAGCCAAACCGGTTCGTTCTCCGTTCCGCATCGCGTCCAATAAGCCTCTCTCGCAGTCCCAATCCACTCTCAGGTTCCCTGTGGAATTGAGTTCGTGTGTGGAATCGATGATGCCGTACCACACGGCCACTGCTTCTGCGCTCATGAATTCTATGCTTTCAATTTCGACCCGCACGAGCGCTTGGATTCCCGAAGGTAGCTAGCATCTCTAGGATTCCTTGATGTTCTTTCTACAATTAATTTTCGGGCCAAAAGCAGACTACTTGAAGATCAGGGAGCATAGATGGGATTGCATGGACTTTCTATGATATGATGTTCATCTTGAAACAAGATTTTGTTGTTACCAGGAATAATTGCTATGCATCTATAACTAATTATTTAACATTATTTAGAGCATGTTTGCGTGGTCTCCTGGGTTTGTCACACATCATTATGCAGAACACTTTTTAGTTTAAATTGCAGGTTTTTGTTCTCTTTATTTATGGAACCATATTGTCCAACAATGTTTATGAATCTTGAAAACATTTATCACTTATTAAGGAATTTAAAAAGAAACAATGACTTTGTTTTCTTGTGTGTCCTTATTTTACATAAAAACATCTCAATGTATGAGAAATTATTGATGAAAAAATTGAGATAAAATACTCCTACATACACTTGCAAGGGATTTTGTAGAATTCAGTATATTAGTCCATGCTTCCACAATTACTTAATTGCAGACTTGGAGTATTGTATATATCTGTCTTGTGTGATCGTGCTGCTGAATATGTTAGAATATTAATAACCATACTTCATTTTTCAAATTTTTTTCCTGATTTGCTGCGTGTTGCGTCAAGCATTATAGGGTCAATCACTAATTAAGGGGTATAATATACTGATCTTTCTTGTTTAATCAGATTGCAATGATGATGTTTGATAAGGTCGAGAAGATTGAAGCAAACTTTTACATAATATCTGCAATGTATGAAAGTGTCTGCTGAAAAAATTAGGAGAGTTGACTCGGCCATTGTAAGGACAAGTTGATTTCTGAAATGGAGCTTTAAAACCTAGACCACCTGTACTTCATTTTCTTTCTATTTCAGATGCATTAGAGGATTGCAATTTTATCCTCATGAACTTTAGTGCCAAAGGCAATTAAGTTGGAAATGTACTACAAAGTACCAATAAAGTTTCATTTTGTTTTTCCATGTTTATTAGAATTTTCATATTGAATAGTCTAGGGATGCTTTATGGATGTTAGATTGGAGTATGTAATGAAATTTCTGTAATTCCTATACAATGATGCCTCTTAAGTTTGAATCTCAAACTAAGTCAAAGTTCCTTGTCTCGATATATACTTTCTCCTTGTCAATGACTTTGATCTAATGAGTTGGCTTTATGCTCTTGGCTGACTAGATTCAGAAACTGGCATTTTTTCATGAGAAATTGTGTTGAATGGAGGATTTTTTATTGCTGTACTGTTATCTTTCTGTATACAGAAGGGTCATGATGTGTGATAACTATGGAATGCAATAAAGATTATGCTCAAAATGTACTTGGTTACCAAA

>Glyma12g13390.4   sequence type=transcript   gene model=Glyma12g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCAACGATGGTAGTTTCAACTTTCAACGACACAAGGGTCAGGGTTTTAACTACGCAAAACCCTACGCCGATCCCGAACGATTCCGATCCAGAAAATGGCATCCGCCGCCGCCAGATCTATATTCCGATCATGCTCCGCCCCCAGGTCAGCGTTTCGCGTCGCATCGGAAGCCAAACCGGTTCGTTCTCCGTTCCGCATCGCGTCCAATAAGCCTCTCTCGCAGTCCCAATCCACTCTCAGGTTCCCTGTGGAATTGAGTTCGTGTGTGGAATCGATGATGCCGTACCACACGGCCACTGCTTCTGCGCTCATGAATTCTATGCTTTCAATTTCGACCCGCACGAGCGCTTGGATTCCCGAAGGCCAAAAGCAGACTACTTGAAGATCAGGGAGCATAGATGGGATTGCATGGACTTTCTATGATATGATGTTCATCTTGAAACAAGATTTTGTTGTTACCAGGAATAATTGCTATGCATCTATAACTAATTATTTAACATTATTTAGAGCATGTTTGCGTGGTCTCCTGGGTTTGTCACACATCATTATGCAGAACACTTTTTAGTTTAAATTGCAGGTTTTTGTTCTCTTTATTTATGGAACCATATTGTCCAACAATGTTTATGAATCTTGAAAACATTTATCACTTATTAAGGAATTTAAAAAGAAACAATGACTTTGTTTTCTTGTGTGTCCTTATTTTACATAAAAACATCTCAATGTATGAGAAATTATTGATGAAAAAATTGAGATAAAATACTCCTACATACACTTGCAAGGGATTTTGTAGAATTCAGTATATTAGTCCATGCTTCCACAATTACTTAATTGCAGACTTGGAGTATTGTATATATCTGTCTTGTGTGATCGTGCTGCTGAATATGTTAGAATATTAATAACCATACTTCATTTTTCAAATTTTTTTCCTGATTTGCTGCGTGTTGCGTCAAGCATTATAGGGTCAATCACTAATTAAGGGGTATAATATACTGATCTTTCTTGTTTAATCAGATTGCAATGATGATGTTTGATAAGGTCGAGAAGATTGAAGCAAACTTTTACATAATATCTGCAATGTATGAAAGTGTCTGCTGAAAAAATTAGGAGAGTTGACTCGGCCATTGTAAGGACAAGTTGATTTCTGAAATGGAGCTTTAAAACCTAGACCACCTGTACTTCATTTTCTTTCTATTTCAGATGCATTAGAGGATTGCAATTTTATCCTCATGAACTTTAGTGCCAAAGGCAATTAAGTTGGAAATGTACTACAAAGTACCAATAAAGTTTCATTTTGTTTTTCCATGTTTATTAGAATTTTCATATTGAATAGTCTAGGGATGCTTTATGGATGTTAGATTGGAGTATGTAATGAAATTTCTGTAATTCCTATACAATGATGCCTCTTAAGTTTGAATCTCAAACTAAGTCAAAGTTCCTTGTCTCGATATATACTTTCTCCTTGTCAATGACTTTGATCTAATGAGTTGGCTTTATGCTCTTGGCTGACTAGATTCAGAAACTGGCATTTTTTCATGAGAAATTGTGTTGAATGGAGGATTTTTTATTGCTGTACTGTTATCTTTCTGTATACAGAAGGGTCATGATGTGTGATAACTATGGAATGCAATAAAGATTATGCTCAAAATGTACTTGGTTACCAAA

>Glyma12g13390.5   sequence type=transcript   gene model=Glyma12g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCAACGATGGTAGTTTCAACTTTCAACGACACAAGGGTCAGGGTTTTAACTACGCAAAACCCTACGCCGATCCCGAACGATTCCGATCCAGAAAATGGCATCCGCCGCCGCCAGATCTATATTCCGATCATGCTCCGCCCCCAGGTCAGCGTTTCGCGTCGCATCGGAAGCCAAACCGGTTCGTTCTCCGTTCCGCATCGCGTCCAATAAGCCTCTCTCGCAGTCCCAATCCACTCTCAGGTTCCCTGTGGAATTGAGTTCGTGTGTGGAATCGATGATGCCGTACCACACGGCCACTGCTTCTGCGCTCATGAATTCTATGCTTTCAATTTCGACCCGCACGAGCGCTTGGATTCCCGAAGGTAGCTAGCATCTCTAGGATTCCTTGATGTTCTTTCTACAATTAATTTTCGGATTGCAATGATGATGTTTGATAAGGTCGAGAAGATTGAAGCAAACTTTTACATAATATCTGCAATGTATGAAAGTGTCTGCTGAAAAAATTAGGAGAGTTGACTCGGCCATTGTAAGGACAAGTTGATTTCTGAAATGGAGCTTTAAAACCTAGACCACCTGTACTTCATTTTCTTTCTATTTCAGATGCATTAGAGGATTGCAATTTTATCCTCATGAACTTTAGTGCCAAAGGCAATTAAGTTGGAAATGTACTACAAAGTACCAATAAAGTTTCATTTTGTTTTTCCATGTTTATTAGAATTTTCATATTGAATAGTCTAGGGATGCTTTATGGATGTTAGATTGGAGTATGTAATGAAATTTCTGTAATTCCTATACAATGATGCCTCTTAAGTTTGAATCTCAAACTAAGTCAAAGTTCCTTGTCTCGATATATACTTTCTCCTTGTCAATGACTTTGATCTAATGAGTTGGCTTTATGCTCTTGGCTGACTAGATTCAGAAACTGGCATTTTTTCATGAGAAATTGTGTTGAATGGAGGATTTTTTATTGCTGTACTGTTATCTTTCTGTATACAGAAGGGTCATGATGTGTGATAACTATGGAATGCAATAAAGATTATGCTCAAAATGTACTTGGTTACCAAA

Coding sequences of Glyma12g13390

Limit To All Plant Sequences

>Glyma12g13390.1   sequence type=CDS   gene model=Glyma12g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCGCCGCCGCCAGATCTATATTCCGATCATGCTCCGCCCCCAGGTCAGCGTTTCGCGTCGCATCGGAAGCCAAACCGGTTCGTTCTCCGTTCCGCATCGCGTCCAATAAGCCTCTCTCGCAGTCCCAATCCACTCTCAGGTTCCCTGTGGAATTGAGTTCGTGTGTGGAATCGATGATGCCGTACCACACGGCCACTGCTTCTGCGCTCATGAATTCTATGCTTTCAATTTCGACCCGCACGAGCGCTTGGATTCCCGAAGATTGCAATGATGATGTTTGA

>Glyma12g13390.3   sequence type=CDS   gene model=Glyma12g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCGCCGCCGCCAGATCTATATTCCGATCATGCTCCGCCCCCAGGTCAGCGTTTCGCGTCGCATCGGAAGCCAAACCGGTTCGTTCTCCGTTCCGCATCGCGTCCAATAAGCCTCTCTCGCAGTCCCAATCCACTCTCAGGTTCCCTGTGGAATTGAGTTCGTGTGTGGAATCGATGATGCCGTACCACACGGCCACTGCTTCTGCGCTCATGAATTCTATGCTTTCAATTTCGACCCGCACGAGCGCTTGGATTCCCGAAGGTAGCTAG

>Glyma12g13390.4   sequence type=CDS   gene model=Glyma12g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCGCCGCCGCCAGATCTATATTCCGATCATGCTCCGCCCCCAGGTCAGCGTTTCGCGTCGCATCGGAAGCCAAACCGGTTCGTTCTCCGTTCCGCATCGCGTCCAATAAGCCTCTCTCGCAGTCCCAATCCACTCTCAGGTTCCCTGTGGAATTGAGTTCGTGTGTGGAATCGATGATGCCGTACCACACGGCCACTGCTTCTGCGCTCATGAATTCTATGCTTTCAATTTCGACCCGCACGAGCGCTTGGATTCCCGAAGGCCAAAAGCAGACTACTTGA

>Glyma12g13390.5   sequence type=CDS   gene model=Glyma12g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCGCCGCCGCCAGATCTATATTCCGATCATGCTCCGCCCCCAGGTCAGCGTTTCGCGTCGCATCGGAAGCCAAACCGGTTCGTTCTCCGTTCCGCATCGCGTCCAATAAGCCTCTCTCGCAGTCCCAATCCACTCTCAGGTTCCCTGTGGAATTGAGTTCGTGTGTGGAATCGATGATGCCGTACCACACGGCCACTGCTTCTGCGCTCATGAATTCTATGCTTTCAATTTCGACCCGCACGAGCGCTTGGATTCCCGAAGGTAGCTAG

Predicted protein sequences of Glyma12g13390

Limit To All Plant Sequences

>Glyma12g13390.1   sequence type=predicted peptide   gene model=Glyma12g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAAARSIFRSCSAPRSAFRVASEAKPVRSPFRIASNKPLSQSQSTLRFPVELSSCVESMMPYHTATASALMNSMLSISTRTSAWIPEDCNDDV*

>Glyma12g13390.3   sequence type=predicted peptide   gene model=Glyma12g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAAARSIFRSCSAPRSAFRVASEAKPVRSPFRIASNKPLSQSQSTLRFPVELSSCVESMMPYHTATASALMNSMLSISTRTSAWIPEGS*

>Glyma12g13390.4   sequence type=predicted peptide   gene model=Glyma12g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAAARSIFRSCSAPRSAFRVASEAKPVRSPFRIASNKPLSQSQSTLRFPVELSSCVESMMPYHTATASALMNSMLSISTRTSAWIPEGQKQTT*

>Glyma12g13390.5   sequence type=predicted peptide   gene model=Glyma12g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAAARSIFRSCSAPRSAFRVASEAKPVRSPFRIASNKPLSQSQSTLRFPVELSSCVESMMPYHTATASALMNSMLSISTRTSAWIPEGS*

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