SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G28400 | AT | Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein | chr4:14048499-14050118 FORWARD LENGTH=283 | SoyBase | E_val: 8.00E-150 | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004722 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| KOG0698 | KOG | Serine/threonine protein phosphatase | JGI | ISS | |
| PTHR13832 | Panther | PROTEIN PHOSPHATASE 2C | JGI | ISS | |
| PTHR13832:SF144 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00481 | PFAM | Protein phosphatase 2C | JGI | ISS | |
| UniRef100_B9RVV7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9RVV7_RICCO | SoyBase | E_val: 2.00E-155 | ISS |
| UniRef100_I1LS61 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LS61_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g13290 not represented in the dataset |
Glyma12g13290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g44450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g116800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g13290.1 sequence type=CDS gene model=Glyma12g13290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTGGCAGAGAAATCCTCCATATGATGAAGGTGAAAGCAGGGTTTGGAACACCAGACACAGGGAATGGAAAAGGCAAAATATCAAAACACATTACACATGGCTTTCACTTGATGAAGGGCAAATCAGCGCATCCTATGGAAGATTATTTAGTTTCAGAATTTAAGCAAGAAAAGGACAGAGAATTAGGCTTGTTTGCAATATTTGATGGCCACTTAGGCCATGATGTAGCAAGCTATTTGCAGAACCACCTTTTCCAAAACATCTTGCAACAGCATGACTTTTGGACTGAGACAGAAAGCGCAGTGAAAAAAGCTTACGTTGAAACAGATGAGAAAATATTGGAACAAGAACTTGTGTTGGGGCGAGGAGGGTCAACAGCTGTGACTGCAATACTTATTGATGGTCAGAAGCTTGTAGTAGCAAATGTTGGTGACTCAAGAGCTATTATCTGTGAGAATGGAAAGGCAAGACAACTATCAGTGGATCATGAACCAAGCAAGGAAAAAAAATCGATTGAGAGGCGTGGGGGTTTTGTATCAAACATTCCAGGAGATGTCCCTCGAGTAGATGGACAGCTGGCAGTAGCAAGGGCTTTTGGTGACAGGAGCCTGAAGATGCATCTTAGTTCAGAACCTGATGTGATTGTACAGGAAGTAGATCAACATACAGAGTTTCTTATTCTGGCTAGTGATGGAATATGGAAGGTTATGTCAAACGAAGAAGCAGTGGAATCTATTAGACAAATAAAGGATGCTCAAGCTGCAGCAAAGCAATTGATTGAAGAGGCAGTTTGCAAGAAAAGTAAGGATGACATATCTTGCATAGTTGTGAGGTTCCAATGA
>Glyma12g13290.1 sequence type=predicted peptide gene model=Glyma12g13290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTGREILHMMKVKAGFGTPDTGNGKGKISKHITHGFHLMKGKSAHPMEDYLVSEFKQEKDRELGLFAIFDGHLGHDVASYLQNHLFQNILQQHDFWTETESAVKKAYVETDEKILEQELVLGRGGSTAVTAILIDGQKLVVANVGDSRAIICENGKARQLSVDHEPSKEKKSIERRGGFVSNIPGDVPRVDGQLAVARAFGDRSLKMHLSSEPDVIVQEVDQHTEFLILASDGIWKVMSNEEAVESIRQIKDAQAAAKQLIEEAVCKKSKDDISCIVVRFQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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