SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G44280 | AT | Annotation by Michelle Graham. TAIR10: RING 1A | chr5:17836115-17839114 REVERSE LENGTH=522 | SoyBase | E_val: 5.00E-119 | ISS |
| GO:0001709 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell fate determination | SoyBase | N/A | ISS |
| GO:0010076 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of floral meristem identity | SoyBase | N/A | ISS |
| GO:0010077 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of inflorescence meristem identity | SoyBase | N/A | ISS |
| GO:0010492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of shoot apical meristem identity | SoyBase | N/A | ISS |
| GO:0045814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of gene expression, epigenetic | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0035102 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: PRC1 complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG0311 | KOG | Predicted E3 ubiquitin ligase | JGI | ISS | |
| PTHR10825 | Panther | RING FINGER PROTEIN | JGI | ISS | |
| PTHR10825:SF4 | Panther | gb def: agcp5478 [anopheles gambiae str. pest] | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_B9RBB3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RBB3_RICCO | SoyBase | E_val: 6.00E-115 | ISS |
| UniRef100_I1LS58 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LS58_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g13270 not represented in the dataset |
Glyma12g13270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g44476 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g116500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g13270.2 sequence type=transcript gene model=Glyma12g13270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATCGCACGCTGCTGCACGAGAAAGGGAGAGAAAAAGGAGGCATTGACACCAAAATCGCGAATCTGATTCATTCTCCTCTCTCGCTGCTCTCTCCACCACCACGCACAGACTGACTCACCAAATAGCAATATCAATGCCTGCTCAGAAGCGTTCCTTCCCTGATGCTCCTAACGATCACCACCGTCACGCCAAATATCACCACCAAGAAGAAGAAGAAGAAGAAGAAGATAATTACAAATCAGATGATTCTCCCCCCGAAGACAAATCCGAGTATGTGTTTGTAGAACTTCTGGAAATACGCAAAGAAGTCCAATGTCCAATTTGCCTAGGTATTATTAAAAAAACACGTACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACACACTGTGCCAGCCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCCTTAATTGCAGCTTTATATCCTAATATTGAGAAGTATGAAATAGAGGAGCTTCAATTTTGTGAAGAGGACAAGAACCGCAATAAGCAGATTCAGGCTTCAATTGCAAAAGTTGCTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTTCATTTGTGACAAGATCACAGCGCAATCAACAAAATGTTCTCTCTAGGAGACAAAACCAAGTGATAGATAATCAAGGATCTGAAGATAATGAGGATGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAACTCAGGCAGAGAAGGCGAAAGAGGCAGACCAGAGGTCGTCCTTCTCAGCCCTCATCATCAACAGCTAGTCCTGATGGTGGATGCATAGAAAGTGACATGGATATAAGAATTTCTTCTAGACCGGTGTCAAAACCTCAAAAATTAACTTGGGGAGGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAATGGTAGCAATAGCAAAAGTTCCCGTAGTAGTCGCATGGCTAAGTTAGTTGATTATCTCCGTAGCTTGAATGAAAACACTGATGAGATGTCCATCTCATTCTTTTGTCTTTGGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGGCCAACATTGTCTGTGAAGCACCTTTGTGAATATGTTGCTCATCAGACACCTTTGCCGGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGTACAGTTTGTGACAAGTCATTTGATGAAACTTCATCCTCTGATGAGCTAACTACGCTAGTTATAGATCCTAGCAAAGATGAACTGGAAACTCTGCAAGGGCATGAATCTTTGGCAGGGATTAAATCCAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGAGGAAGGAATGAGCATTATAGACATTTTTGAGATTTATGAGTGCAGGGCTTATTCTGTACGTACATAGGAAAATTTTCGACTACAAAACTATATATAGTTAAATAATATGTACCTCCCGAAAGGTTATATAGAAAGTTTTGATATTTATTGATGTCAGGACTTATTCTGTATGTACATAGGAAAATTTTCAACTAGAAAACTATAGTGAAGTAATATGATATGAACCTCCTGAAAGGTCATTTATATACAAGAGAGTTTGTTTCAACTTGCATGTAAGTTTGGTACATAAGGCTGCGCTGTACTCGCTAAAATTTAATACAGTTTTAGTTTTATTTA
>Glyma12g13270.1 sequence type=CDS gene model=Glyma12g13270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTGCTCAGAAGCGTTCCTTCCCTGATGCTCCTAACGATCACCACCGTCACGCCAAATATCACCACCAAGAAGAAGAAGAAGAAGAAGAAGATAATTACAAATCAGATGATTCTCCCCCCGAAGACAAATCCGAGTATGTGTTTGTAGAACTTCTGGAAATACGCAAAGAAGTCCAATGTCCAATTTGCCTAGGTATTATTAAAAAAACACGTACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACACACTGTGCCAGCCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCCTTAATTGCAGCTTTATATCCTAATATTGAGAAGTATGAAATAGAGGAGCTTCAATTTTGTGAAGAGGACAAGAACCGCAATAAGCAGATTCAGGCTTCAATTGCAAAAGTTGCTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTTCATTTGTGACAAGATCACAGCGCAATCAACAAAATGTTCTCTCTAGGAGACAAAACCAAGTGATAGATAATCAAGGATCTGAAGATAATGAGGATGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAACTCAGGCAGAGAAGGCGAAAGAGGCAGACCAGAGGTCGTCCTTCTCAGCCCTCATCATCAACAGCTAGTCCTGATGGTGGATGCATAGAAAGTGACATGGATATAAGAATTTCTTCTAGACCGGTGTCAAAACCTCAAAAATTAACTTGGGGAGGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAATGGTAGCAATAGCAAAAGTTCCCGTAGTAGTCGCATGGCTAAGTTAGTTGATTATCTCCGTAGCTTGAATGAAAACACTGATGAGTTAGATGTCCATCTCATTCTTTTGTCTTTGGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGGCCAACATTGTCTGTGAAGCACCTTTGTGAATATGTTGCTCATCAGACACCTTTGCCGGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGTACAGTTTGTGACAAGTCATTTGATGAAACTTCATCCTCTGATGAGCTAACTACGCTAGTTATAGATCCTAGCAAAGATGAACTGGAAACTCTGCAAGGGCATGAATCTTTGGCAGGGATTAAATCCAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGAGGAAGGAATGA >Glyma12g13270.2 sequence type=CDS gene model=Glyma12g13270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTGCTCAGAAGCGTTCCTTCCCTGATGCTCCTAACGATCACCACCGTCACGCCAAATATCACCACCAAGAAGAAGAAGAAGAAGAAGAAGATAATTACAAATCAGATGATTCTCCCCCCGAAGACAAATCCGAGTATGTGTTTGTAGAACTTCTGGAAATACGCAAAGAAGTCCAATGTCCAATTTGCCTAGGTATTATTAAAAAAACACGTACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACACACTGTGCCAGCCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCCTTAATTGCAGCTTTATATCCTAATATTGAGAAGTATGAAATAGAGGAGCTTCAATTTTGTGAAGAGGACAAGAACCGCAATAAGCAGATTCAGGCTTCAATTGCAAAAGTTGCTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTTCATTTGTGACAAGATCACAGCGCAATCAACAAAATGTTCTCTCTAGGAGACAAAACCAAGTGATAGATAATCAAGGATCTGAAGATAATGAGGATGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAACTCAGGCAGAGAAGGCGAAAGAGGCAGACCAGAGGTCGTCCTTCTCAGCCCTCATCATCAACAGCTAGTCCTGATGGTGGATGCATAGAAAGTGACATGGATATAAGAATTTCTTCTAGACCGGTGTCAAAACCTCAAAAATTAACTTGGGGAGGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAATGGTAGCAATAGCAAAAGTTCCCGTAGTAGTCGCATGGCTAAGTTAGTTGATTATCTCCGTAGCTTGAATGAAAACACTGATGAGATGTCCATCTCATTCTTTTGTCTTTGGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGGCCAACATTGTCTGTGA
>Glyma12g13270.1 sequence type=predicted peptide gene model=Glyma12g13270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPAQKRSFPDAPNDHHRHAKYHHQEEEEEEEDNYKSDDSPPEDKSEYVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPNIEKYEIEELQFCEEDKNRNKQIQASIAKVAQRQSEALVKRRRDTPGSFVTRSQRNQQNVLSRRQNQVIDNQGSEDNEDENDNNEKDSSSTDERCTELRQRRRKRQTRGRPSQPSSSTASPDGGCIESDMDIRISSRPVSKPQKLTWGGGGFRSHTRHGSGNGSNSKSSRSSRMAKLVDYLRSLNENTDELDVHLILLSLDKQSTPSLQQPHLCCRPTLSVKHLCEYVAHQTPLPVEEVEILAVKGCCSTVCDKSFDETSSSDELTTLVIDPSKDELETLQGHESLAGIKSKCISKREHLILAYRRKE* >Glyma12g13270.2 sequence type=predicted peptide gene model=Glyma12g13270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPAQKRSFPDAPNDHHRHAKYHHQEEEEEEEDNYKSDDSPPEDKSEYVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPNIEKYEIEELQFCEEDKNRNKQIQASIAKVAQRQSEALVKRRRDTPGSFVTRSQRNQQNVLSRRQNQVIDNQGSEDNEDENDNNEKDSSSTDERCTELRQRRRKRQTRGRPSQPSSSTASPDGGCIESDMDIRISSRPVSKPQKLTWGGGGFRSHTRHGSGNGSNSKSSRSSRMAKLVDYLRSLNENTDEMSISFFCLWTNKVHQACSSHTFAVGQHCL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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