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Report for Sequence Feature Glyma12g13255

Feature Type:gene_model
Chromosome:Gm12
Start:11578631
stop:11584002
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g13255
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G20635AT Annotation by Michelle Graham. TAIR10: ATP binding;protein kinases;protein serine/threonine kinases | chr2:8900410-8903384 FORWARD LENGTH=525 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1164 KOG Casein kinase (serine/threonine/tyrosine protein kinase) JGI ISS
PTHR14030Panther MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 AND BUBR1 JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF08311PFAM Mad3/BUB1 homology region 1 JGI ISS
UniRef100_F4IVI0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Catalytic domain of protein kinase and Mad3-BUB1-I domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4IVI0_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI0002339A16UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339A16 related cluster n=1 Tax=unknown RepID=UPI0002339A16 SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g13255
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g13255 not represented in the dataset
Glyma12g13255 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g13255
ParalogEvidenceComments
Glyma06g44493 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g13255 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g116400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g13255
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma12g13255
>Glyma12g13255.2   sequence type=transcript   gene model=Glyma12g13255   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAAATTTCCGCGCTTCAACATTCAGTTATCAGATTCCGAGTTTCTCACACAATCTCAATGGCCACCATGCTCAGCTACTCACCCCCGCGTTTCAAAATCGCCGTCGACGCTCACCACGATCCTCTCTTACCTTTTCTCCGGTTCCTCTCTTTCTCTCCCATACACTTTCTCACGCACACACACAGTTCCACAATCACAATCAATTTTCTGCGTTTTTTTCTGTGTGAATTTCAGGTCTATCAAGAAAGCCCTAGAAGCTTCCGACGACTCCGCTTCGAATCTCAGTAACTTACTCAAAGATTGCATCAGAAACTTCAAGAACAATGACCGCTACCGAAACGACGTCAGATTCCTCAAGATCTGGCTCCTATATATGGGAGTTAGTGATGATTTTGAAAGTGTTTTCAAGGAAATGCTGGACAGTAATGTATGTACCAATAGTTCTTCACTTTATGTGTGGTCTGCAAGTTTTTTTGAGTTGAAGGGAAGATTGCATGATGCTCTCACCATCTATCAGCTTGGCATTTGCAGGAATGCAGAGCCAATTGAGTGGTTGAAGAAGGCACATGCCTTATTTCTCAATAGAATTTCTGAAATACAGAATGCTGCTTCAACTCAGAAGGTTGATGATAAAGAATCCAAGAAATTTGAAGATAATGGCATTAATCCTTGGGGCACCTCTACCATGGATAGCCTGTTAAAGAAAATATATCCTTTAATTATGAAATTTGATGGGTATCGTTCAAGCACTAAACCATACACAGGAAAAGTGGCCTTATCTACCTTGAAGAATTCATCAAGGAATAAAGTTATAGAGATAGGTGGAAAGAAGTACCATATAAAAGGCTGCGCTGGACAGGGTGGTTTTGCCCAAGTATATAAGGCTAATGTTGACAGTGACCCTGACAATGTTGTTGCACTAAAGATACAAAAACCAGCTTTCCCTTGGGAATTTTACATTTATCGTCAGCTTGATAAGCGCATCTTAGATAGAGAGAGGTCAAGTTATGGTTTCGCTCACCGAATTCATATCTATTCTGACTGTAGTATACTCATCTGTGACTATTTAGCTAATGGGACATTACAGGATGTGATAAACTCATATGTGGTCTTAGGAAAATCCATGGAAGAAGTGTTATGCATTTACTACACAATAGAAATGTTACACATGGTTGAAACTCTGCATGGTTTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATTTGCTAATTCGCTATGCTAGGGGTGACCTTACAGAAGATGGGTTCTTCAGCCGAATTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATTGATCTGCATCTCTTTCCAGATCACATACTATTTAAGGGAGATTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCTAGAGGATAAACCGTGGAAATTTCAGGTAGATGCATATGGCCTTTGTGCTATTGTTCATATGATGTTGCATAGTTCCTATATGGAAGTCGTCAAAAAAGAACAATCTGATGGGAGCTACATGTATCTTCCCAAACTACCCTTTAAACGTTACTGGAACATTGAGCTCTGGAAGACTTTCTTCACTAAGATGCTAAACCAATACCCCCATGATGATGATAGGAGTTTGCTGCAGGACTTGAAGAAGTCCTTCCAAGACTACATGAGCTCCAATCCGCAGCTTATAAAGAAACTAAAGGAGTTACTCTCAAAGCAAAGGGCTTCCTTGTGCTCTGCTTAATGTTTTAAGATCACAACACCTCCTATTATGTTGTTGTTATGAAGGTAGAAAAGTAAACAAATGCACAGTGCAAGCAATCACGGACAGATTAGAAGGTAAACTTCCTTTGGTGTTTTGTCTAGTTTTCTAGCACACGCCCTTTAATTAGGGAAAAGCCCCAAGTTTTTGGTGAGTTAAGATCATAATGCAGTTCAATTAAATCTAGGGTGGAGTGGCTACACTCTTACATATCCACTATAGAGACAAGCTCTGTGTGTCTTCTGTAGTTTGAGTAAGGTCAGAAATTTGACCTTTTAAGTAATGGTGTACATAAATATGCAAATGTAGAGTGTCAGTAAGCAGGTACGACAGTTGTATATGCCGTTATGATATTTTTTGTCTAGGGCATGTATCATGTTCAAAGCAGCTATAAAGTTGAGTTTTTTTTAATCTCTATATTTGGTTGAG
Coding sequences of Glyma12g13255
>Glyma12g13255.1   sequence type=CDS   gene model=Glyma12g13255   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCATGCTCAGCTACTCACCCCCGCGTTTCAAAATCGCCGTCGACGCTCACCACGATCCTCTCTTACCTTTTCTCCGGTCTATCAAGAAAGCCCTAGAAGCTTCCGACGACTCCGCTTCGAATCTCAGTAACTTACTCAAAGATTGCATCAGAAACTTCAAGAACAATGACCGCTACCGAAACGACGTCAGATTCCTCAAGATCTGGCTCCTATATATGGGAGTTAGTGATGATTTTGAAAGTGTTTTCAAGGAAATGCTGGACAGTAATGTATGTACCAATAGTTCTTCACTTTATGTGTGGTCTGCAAGTTTTTTTGAGTTGAAGGGAAGATTGCATGATGCTCTCACCATCTATCAGCTTGGCATTTGCAGGAATGCAGAGCCAATTGAGTGGTTGAAGAAGGCACATGCCTTATTTCTCAATAGAATTTCTGAAATACAGAATGCTGCTTCAACTCAGAAGGTTGATGATAAAGAATCCAAGAAATTTGAAGATAATGGCATTAATCCTTGGGGCACCTCTACCATGGATAGCCTGTTAAAGAAAATATATCCTTTAATTATGAAATTTGATGGGTATCGTTCAAGCACTAAACCATACACAGGAAAAGTGGCCTTATCTACCTTGAAGAATTCATCAAGGAATAAAGTTATAGAGATAGGTGGAAAGAAGTACCATATAAAAGGCTGCGCTGGACAGGGTGGTTTTGCCCAAGTATATAAGGCTAATGTTGACAGTGACCCTGACAATGTTGTTGCACTAAAGATACAAAAACCAGCTTTCCCTTGGGAATTTTACATTTATCGTCAGCTTGATAAGCGCATCTTAGATAGAGAGAGGTCAAGTTATGGTTTCGCTCACCGAATTCATATCTATTCTGACTGTAGTATACTCATCTGTGACTATTTAGCTAATGGGACATTACAGGATGTGATAAACTCATATGTGGTCTTAGGAAAATCCATGGAAGAAGTGTTATGCATTTACTACACAATAGAAATGTTACACATGGTTGAAACTCTGCATGGTTTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATTTGCTAATTCGCTATGCTAGGGGTGACCTTACAGAAGATGGGTTCTTCAGCCGAATTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATTGATCTGCATCTCTTTCCAGATCACATACTATTTAAGGGAGATTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCTAGAGGATAAACCGTGGAAATTTCAGGTAGATGCATATGGCCTTTGTGCTATTGTTCATATGATGTTGCATAGTTCCTATATGGAAGTCGTCAAAAAAGAACAATCTGATGGGAGCTACATGTATCTTCCCAAACTACCCTTTAAACGTTACTGGAACATTGAGCTCTGGAAGACTTTCTTCACTAAGATGCTAAACCAATACCCCCATGATGATGATAGGAGTTTGCTGCAGGACTTGAAGAAGTCCTTCCAAGACTACATGAGCTCCAATCCGCAGCTTATAAAGAAACTAAAGGAGTTACTCTCAAAGCAAAGGGCTTCCTTGTGCTCTGCTTAA

>Glyma12g13255.2   sequence type=CDS   gene model=Glyma12g13255   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTTAGTGATGATTTTGAAAGTGTTTTCAAGGAAATGCTGGACAGTAATGTATGTACCAATAGTTCTTCACTTTATGTGTGGTCTGCAAGTTTTTTTGAGTTGAAGGGAAGATTGCATGATGCTCTCACCATCTATCAGCTTGGCATTTGCAGGAATGCAGAGCCAATTGAGTGGTTGAAGAAGGCACATGCCTTATTTCTCAATAGAATTTCTGAAATACAGAATGCTGCTTCAACTCAGAAGGTTGATGATAAAGAATCCAAGAAATTTGAAGATAATGGCATTAATCCTTGGGGCACCTCTACCATGGATAGCCTGTTAAAGAAAATATATCCTTTAATTATGAAATTTGATGGGTATCGTTCAAGCACTAAACCATACACAGGAAAAGTGGCCTTATCTACCTTGAAGAATTCATCAAGGAATAAAGTTATAGAGATAGGTGGAAAGAAGTACCATATAAAAGGCTGCGCTGGACAGGGTGGTTTTGCCCAAGTATATAAGGCTAATGTTGACAGTGACCCTGACAATGTTGTTGCACTAAAGATACAAAAACCAGCTTTCCCTTGGGAATTTTACATTTATCGTCAGCTTGATAAGCGCATCTTAGATAGAGAGAGGTCAAGTTATGGTTTCGCTCACCGAATTCATATCTATTCTGACTGTAGTATACTCATCTGTGACTATTTAGCTAATGGGACATTACAGGATGTGATAAACTCATATGTGGTCTTAGGAAAATCCATGGAAGAAGTGTTATGCATTTACTACACAATAGAAATGTTACACATGGTTGAAACTCTGCATGGTTTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATTTGCTAATTCGCTATGCTAGGGGTGACCTTACAGAAGATGGGTTCTTCAGCCGAATTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATTGATCTGCATCTCTTTCCAGATCACATACTATTTAAGGGAGATTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCTAGAGGATAAACCGTGGAAATTTCAGGTAGATGCATATGGCCTTTGTGCTATTGTTCATATGATGTTGCATAGTTCCTATATGGAAGTCGTCAAAAAAGAACAATCTGATGGGAGCTACATGTATCTTCCCAAACTACCCTTTAAACGTTACTGGAACATTGAGCTCTGGAAGACTTTCTTCACTAAGATGCTAAACCAATACCCCCATGATGATGATAGGAGTTTGCTGCAGGACTTGAAGAAGTCCTTCCAAGACTACATGAGCTCCAATCCGCAGCTTATAAAGAAACTAAAGGAGTTACTCTCAAAGCAAAGGGCTTCCTTGTGCTCTGCTTAA
Predicted protein sequences of Glyma12g13255
>Glyma12g13255.1   sequence type=predicted peptide   gene model=Glyma12g13255   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATMLSYSPPRFKIAVDAHHDPLLPFLRSIKKALEASDDSASNLSNLLKDCIRNFKNNDRYRNDVRFLKIWLLYMGVSDDFESVFKEMLDSNVCTNSSSLYVWSASFFELKGRLHDALTIYQLGICRNAEPIEWLKKAHALFLNRISEIQNAASTQKVDDKESKKFEDNGINPWGTSTMDSLLKKIYPLIMKFDGYRSSTKPYTGKVALSTLKNSSRNKVIEIGGKKYHIKGCAGQGGFAQVYKANVDSDPDNVVALKIQKPAFPWEFYIYRQLDKRILDRERSSYGFAHRIHIYSDCSILICDYLANGTLQDVINSYVVLGKSMEEVLCIYYTIEMLHMVETLHGFGLIHGDFKPDNLLIRYARGDLTEDGFFSRIGPWCDQGLCLVDWGRGIDLHLFPDHILFKGDCRTSGFRCIEMLEDKPWKFQVDAYGLCAIVHMMLHSSYMEVVKKEQSDGSYMYLPKLPFKRYWNIELWKTFFTKMLNQYPHDDDRSLLQDLKKSFQDYMSSNPQLIKKLKELLSKQRASLCSA*

>Glyma12g13255.2   sequence type=predicted peptide   gene model=Glyma12g13255   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVSDDFESVFKEMLDSNVCTNSSSLYVWSASFFELKGRLHDALTIYQLGICRNAEPIEWLKKAHALFLNRISEIQNAASTQKVDDKESKKFEDNGINPWGTSTMDSLLKKIYPLIMKFDGYRSSTKPYTGKVALSTLKNSSRNKVIEIGGKKYHIKGCAGQGGFAQVYKANVDSDPDNVVALKIQKPAFPWEFYIYRQLDKRILDRERSSYGFAHRIHIYSDCSILICDYLANGTLQDVINSYVVLGKSMEEVLCIYYTIEMLHMVETLHGFGLIHGDFKPDNLLIRYARGDLTEDGFFSRIGPWCDQGLCLVDWGRGIDLHLFPDHILFKGDCRTSGFRCIEMLEDKPWKFQVDAYGLCAIVHMMLHSSYMEVVKKEQSDGSYMYLPKLPFKRYWNIELWKTFFTKMLNQYPHDDDRSLLQDLKKSFQDYMSSNPQLIKKLKELLSKQRASLCSA*






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