Glyma12g13240 - SoyBase

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Report for Sequence Feature Glyma12g13240

Feature Type:	gene_model
Chromosome:	Gm12
Start:	11571262
stop:	11577409
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g13240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28390	AT	Annotation by Michelle Graham. TAIR10: ADP/ATP carrier 3 \| chr4:14041486-14042781 REVERSE LENGTH=379	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0015865	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleotide transport	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005471	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP:ADP antiporter activity	SoyBase	N/A	ISS
KOG0749	KOG	Mitochondrial ADP/ATP carrier proteins	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF35	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_B9RVW7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP,ATP carrier protein, putative n=1 Tax=Ricinus communis RepID=B9RVW7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LS55	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LS55_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g13240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g13240

Paralog	Evidence	Comments
Glyma06g44510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g13240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g116300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g13240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g13240

Limit To All Plant Sequences

>Glyma12g13240.1   sequence type=CDS   gene model=Glyma12g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATGGACCACAGCATCCATCAGTTGTTCAGAAGCTAGCTGGACAGTCTTACCTGGTGTCCAGGCTTAGCCCCAACTTTAACTCTAGGAATTATTCTGCAACTGGTTCTTACGTCAATGGCGGAATGCACTCGCCTGGGTTGGCTGTTGTGTCACCTGTATCTCCAGTTACTGTGCATGCTCCAGCAGAGAAAGGAGTGAGTGGATTTCTAGTGGATTTTCTGATGGGTGGAGTATCCGCTGCTGTATCGAAGACAGCTGCTGCTCCAATTGAACGAGTCAAATTGCTTATCCAAAATCAGGATGAAATGATAAAAAGTGGTCGGCTATCTGAGCCATACAAGGGAATTGGTGATTGTTTTGCTCGAACAATGAAGGATGAGGGTGTGATTGCTCTTTGGAGAGGAAATACTGCTAATGTTATCAGATATTTCCCTACTCAGGCTCTGAACTTTGCCTTTAAGGATTACTTTAAGAGGCTTTTCAACTTTAAAAAGGATAAAGATGGCTACTGGAAGTGGTTTGCTGGGAATTTGGCATCTGGTGGGGCTGCTGGGGCTTCTTCCCTCTTATTTGTCTATTCTTTGGATTATGCCCGTACTCGTTTAGCAAACGATGCAAAGGCTGCAAAGAAGGGTGGCGAGAGGCAGTTTAATGGCTTGGTTGATGTTTACAGGAAAACCATCAAGTCTGATGGTGTTGCTGGCCTTTATCGTGGGTTCAACATCTCATGTGTTGGAATTATAGTGTATCGTGGTCTTTACTTTGGAATGTATGATTCCCTGAAACCAGTAGTTTTGGTTGGTGGGTTGCAGGATAGTTTCTTTGCTAGTTTCCTTTTGGGATGGGGAATCACAATTGGTGCTGGTTTGGCTTCTTATCCCATTGACACTGTTCGAAGAAGAATGATGATGACTTCTGGAGAAGCTGTGAAGTACAAGAGCTCTTTGCATGCATTCCAAACAATCGTCGCAAATGAGGGTGCCAAGTCACTCTTCAAAGGTGCTGGTGCGAACATATTGCGTGCTGTTGCAGGTGCTGGTGTGCTTGCTGGTTATGACAAGCTGCAGCTCATTTTGTTTGGAAAGAAATATGGATCTGGCGGCGGCTAA

Predicted protein sequences of Glyma12g13240

Limit To All Plant Sequences

>Glyma12g13240.1   sequence type=predicted peptide   gene model=Glyma12g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADGPQHPSVVQKLAGQSYLVSRLSPNFNSRNYSATGSYVNGGMHSPGLAVVSPVSPVTVHAPAEKGVSGFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFARTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTIKSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGGLQDSFFASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLHAFQTIVANEGAKSLFKGAGANILRAVAGAGVLAGYDKLQLILFGKKYGSGGG*

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