Report for Sequence Feature Glyma12g13230
Feature Type: gene_model
Chromosome: Gm12
Start: 11565977
stop: 11567059
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g13230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G28380 AT
Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein | chr4:14039756-14040931 REVERSE LENGTH=391
SoyBase E_val: 1.00E-172 ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF665 Panther
JGI ISS
PF00560 PFAM
Leucine Rich Repeat
JGI ISS
UniRef100_B9RVW8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RVW8_RICCO
SoyBase E_val: 2.00E-174 ISS
UniRef100_I1LS54 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LS54_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g13230
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g13230
Paralog Evidence Comments
Glyma06g44520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g13230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g116200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g13230
Coding sequences of Glyma12g13230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g13230.1 sequence type=CDS gene model=Glyma12g13230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTTTCTTGGGCTACAAGCATGGAAGCAAGTGATCTACTCAGACCCAAATAACTTCACTTCCAACTGGGTAGGTCCTTCAGTTTGCAACTACACAGGTGTGTACTGTGCTCCCTCACTTGATGACCCTAAAGTGACAGTTGTGGCTGGCATTGACCTTAACTTTGCAGACTTAGCAGGGTTCCTACCCAATGAAATAGGCCTTCTCTCTGACCTTGCAGTCCTTCATCTCAGCAACAACCGCTTCTGTGGCATCCTCCCAATGTCCTTCACCAACCTCACTCTACTCTATGAGCTCGACCTTAGCAACAACAGATTTGTGGGACCTTTTCCTTTGGTTGTGCTTTCCCTTCATATGCTCAAATACCTTGACCTCCGCTACAACGAGTTTGAAGGGCCATTGCCTCCTCAACTCTTCAACAACACCATCGATGCCATTTTTGTTAACAACAACCGCTTCAGCAGTACTATTCCACCAAACTTAGGCAAAATCTCAGCTTCTGTAGTTGTCTTTGCCAACAACAAATTCGGAGGGTGTCTCCCCGAAAGCATAGTGAACTTTGCTGACACTTTGGAGGAGCTTGTGCTAATCAACACCAGTTTGTCTGGGTGTTTGCCACAACAAGTAGGCTTTCTCTACAAACTAAGAGTGTTGGATGTGAGTTTCAATAACATTGTTGGCCCTATACCTTATAGCCTTTCAGGGCTGTCTCACTTGGAGCAGCTGAATTTGGGGCATAACATGATGAGTGGCACAGTCCCTGTGGGGGTTTGTGAGTTGCCAAACTTGGCAAACTTCACTTTCTCTTACAACTTCTTCTGTGAGGAAGAGGGTATCTGTCAGAACTTGACATCAAAGAGGATAGTGTTTGATGATAGGAGGAACTGTTTGCCAGAGAAGCCACTGCAGAGGAGTGAAAAGGAATGCAAGGCCAAACTTGAACACCCAGTTGATTGCTCTGAGCTTTGCTGTGTTGTTGGGAGCAATGTCTCTGCTGGCTCAGTGGCTGTGCCACCTGCTGCTGCAGTTCCTGCAGCAATGCCTGTGTCTGCACCTCTTCTTGCACCAAGCCACCCTTAA
Predicted protein sequences of Glyma12g13230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g13230.1 sequence type=predicted peptide gene model=Glyma12g13230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAFLGLQAWKQVIYSDPNNFTSNWVGPSVCNYTGVYCAPSLDDPKVTVVAGIDLNFADLAGFLPNEIGLLSDLAVLHLSNNRFCGILPMSFTNLTLLYELDLSNNRFVGPFPLVVLSLHMLKYLDLRYNEFEGPLPPQLFNNTIDAIFVNNNRFSSTIPPNLGKISASVVVFANNKFGGCLPESIVNFADTLEELVLINTSLSGCLPQQVGFLYKLRVLDVSFNNIVGPIPYSLSGLSHLEQLNLGHNMMSGTVPVGVCELPNLANFTFSYNFFCEEEGICQNLTSKRIVFDDRRNCLPEKPLQRSEKECKAKLEHPVDCSELCCVVGSNVSAGSVAVPPAAAVPAAMPVSAPLLAPSHP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
