Glyma12g13220 - SoyBase

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Report for Sequence Feature Glyma12g13220

Feature Type:	gene_model
Chromosome:	Gm12
Start:	11554749
stop:	11565186
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g13220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20650	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr2:8903954-8907017 REVERSE LENGTH=559	SoyBase	E_val: 0	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0828	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR12477	Panther	SYNOVIOLIN-RELATED	JGI		ISS
PTHR12477:SF42	Panther		JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B9RVW9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RVW9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C89C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C89C related cluster n=1 Tax=unknown RepID=UPI000233C89C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g13220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g13220

Paralog	Evidence	Comments
Glyma06g44530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g13220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g116100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g13220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g13220

Limit To All Plant Sequences

>Glyma12g13220.1   sequence type=CDS   gene model=Glyma12g13220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGTGTTTGGGGTTTGACATGGTTGAGGTTGACTCTGAAAGATTGAAACTTGAGAGTAGAGGAGTGGGGATTTGGCTGAGAATTGCATGTGGGTGGTTGGTGTTTATGCTGTTTTTCAGTCCTGTGGCAGGTTTGAGACCCTTGAGGGACAGAACTAATTCATGGGGTGATGAGTGGGTTTTTACAAGAAAAGACGAAAGTGACTTAGGTCCATTTTCACAATGGAACATAAGTGGAACTTACAGAGGGAATTGGAAGTTTTTAGATACTACAAATGGTTCTACCGGATTTCCAGACATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTTAGTATGCCCACAAAGATAACTGGTGTACATTATGTGCAGGGGGTAGTCATATTCCATGATGTATTTGACAATGAATACAATGTTGGTGGAGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTATAGGCAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGGTGGGGTTAAATCAGGATGGAGATTATATTTTATCCAATCCATATCATCTGCTTGGAGTTTTCTCATCACAAGTATTCCAAGAGTCTTCACAACATAAGATGTGGAGAAGAAAGCATTCTCCATTACATGGCATGGAGAAACATTGCAATGTAGAAATCGCTGCACATGTTTCACGCCTGTCATCATCAAAACATGAAGGGGAGCACGATTCTTTCCAGCTAGAAGGGTTAATGGAGAGTCCGTCCGTGGATGACGATGGGGACTGCTTCTCGCCTTTACAGTTAAACGCAACATCCATCAACATTGAAGTCTACTATAATAAAGCATTGAACTATACCTTGATGGTTACTTTTATCTCATTTTTGCAAGTTCTTCTATTAATTCGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTTTCAATATTAATGATTGGTCAGCAAGCCATAGTAGATGCTTATCTTTGCCTTACACATTTGACTGCAGGAATACTAGTTGAATCCCTGTTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAGTAGGCCTTTGAGCAATGGTGAAGGTTGGGAGACAATGAGACGTGAATTGTCAGTTTTATACAGCCGTTTCTATGGGATCCTATTGGGAGGCATACTGCTCATGTATGAATTCCACAATCATTTGAGACCTATTCTTCTTCTTGTATACTCATTTTGGATACCTCAAATAATCACCAATGTTATTCGTGACTCGCGCAAGCCTTTGCATCCTCATTATATCTTAGGCATAACTGTTACTCGGCTAGCAATCCCATTATATATTTTTGGTTGTCCTAACAACTTCTTGCACATAGAACCAGATCAGAGCTGGTGTGTTTGTTTGGCTATATTTGTTGGACTTCAAGCTGCAATTCTCTTGCTTCAGCACTATTTTGGGTCCTTGTGGTTCATTCCTCGTCAGTTTCTACCTGAGAAATACTGCTATTATCGGAGGTTTGCTCAAGATACAAATCATGCCACAGACTGCGTTATATGCATGACAGCCATTGATCTTTCTCCGCGATCTAATGATTGCATGGTGACCCCTTGTGATCATTTTTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCTACTTGCCGGGGCCCTCTTCCACCTGCATAA

Predicted protein sequences of Glyma12g13220

Limit To All Plant Sequences

>Glyma12g13220.1   sequence type=predicted peptide   gene model=Glyma12g13220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLCLGFDMVEVDSERLKLESRGVGIWLRIACGWLVFMLFFSPVAGLRPLRDRTNSWGDEWVFTRKDESDLGPFSQWNISGTYRGNWKFLDTTNGSTGFPDIRKINGNSVIELVSMPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPYRQLRMVANSGKEVGLNQDGDYILSNPYHLLGVFSSQVFQESSQHKMWRRKHSPLHGMEKHCNVEIAAHVSRLSSSKHEGEHDSFQLEGLMESPSVDDDGDCFSPLQLNATSINIEVYYNKALNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIVDAYLCLTHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNHLRPILLLVYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFLHIEPDQSWCVCLAIFVGLQAAILLLQHYFGSLWFIPRQFLPEKYCYYRRFAQDTNHATDCVICMTAIDLSPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRGPLPPA*

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