Glyma12g13190 - SoyBase

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Report for Sequence Feature Glyma12g13190

Feature Type:	gene_model
Chromosome:	Gm12
Start:	11535992
stop:	11542680
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g13190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
KOG3048	KOG	Molecular chaperone Prefoldin, subunit 5	JGI		ISS
PTHR15111	Panther	RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN (NNX3)	JGI		ISS
PF02996	PFAM	Prefoldin subunit	JGI		ISS
UniRef100_D7KCI2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Prefoldin subunit family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KCI2_ARALL	SoyBase	E_val: 2.00E-71	ISS
UniRef100_I1LS52	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LS52_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g13190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g13190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g116000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g13190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g13190

Limit To All Plant Sequences

>Glyma12g13190.1   sequence type=CDS   gene model=Glyma12g13190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAATCAACGAAGAAGGGGTCTGTGACCTCACTCGCCTCCCTCTTCCCAGTAGAGGAGGCGCAAAGGGCGGCCAAGCGCGTCGAAGACACCATTGCCGACAAGCAGAGCGAGCTCGACCGCCTACGAGGTTTCGCCACCGACAACAACAGCCTCATCAACCTCGTCCACAAGCTCCCCGAACAGCTCTCCCACGACATCATGGTTCCGTTTGGGAAAGCAGCGTTCTTCCCAGGTCGTTTGATTCACACCAATGAGTTCCTGGTTCTTTTGGGAGAAGGGTATTATGCTGAGAGAACTTCAAAGCAAACCGTTGAGATTTTGCAGCGAAGAGGGAAGTCCTTGGATTCGCAGGTTGATTCTCTTGAGGCCAATATCAAGGACCTTGAAGCAGAGGCTTCATTTTTCAATGCCACAGCTTCTCAAGTAGCGGAGGGTCTTGTGGAGATAAGGGAAGATTATCTGGAGAAAGACTCTAACGAAGGGGAATTTAAATCAGGTCATCTGCAGCAAGAGGCTCCTAATTTGGGAAATGCTACAGCTGATGATGGGGAATATGCTCGTATGCTGGCTATAATGGATGAACTTGAAAAAGAAGAGCTTGCTGCAGAAAGTGGCAATCACAGTGATCAAAATGATGAAAGTACTGGGGATTTCCATGATATATCATATCAGGAACATATTGATAACAAACTCCAAAATTCAAAAGATGTTCATCAAAGTGAACTACTGGACCAGATTAATAATAAAATTATAACAGCTGATCTTCCAAAAAAACAGAATCGTAAAGAAGATATAACTGATCAGTTGAATTTTGCTAGCCTGGCAGTAGAATCTAGGGTCAAAGAGAGGGAAAATTTTGTAGAATACATTGATCCTAGTGAAAAGATTCCTGCTCGTTCTAAAGAAAGGTCAGTTCAAGCAACTACGGCATCAAAAACTGAGGTTCGACACCAAACTTCACAACCATCATTTGACAGTCGCAAGGCTTTTACAGGCTCTATTATAGAGCATGCTGAGAATATAAAACCAACTACAAGACAACAAAGTTCAGCTTCTTCACAGGATTCTGGTTCTCAATCTTCAAAACCAGTCTCCAGATTCAAAATGCAGAGAAGATAG

Predicted protein sequences of Glyma12g13190

Limit To All Plant Sequences

>Glyma12g13190.1   sequence type=predicted peptide   gene model=Glyma12g13190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDESTKKGSVTSLASLFPVEEAQRAAKRVEDTIADKQSELDRLRGFATDNNSLINLVHKLPEQLSHDIMVPFGKAAFFPGRLIHTNEFLVLLGEGYYAERTSKQTVEILQRRGKSLDSQVDSLEANIKDLEAEASFFNATASQVAEGLVEIREDYLEKDSNEGEFKSGHLQQEAPNLGNATADDGEYARMLAIMDELEKEELAAESGNHSDQNDESTGDFHDISYQEHIDNKLQNSKDVHQSELLDQINNKIITADLPKKQNRKEDITDQLNFASLAVESRVKERENFVEYIDPSEKIPARSKERSVQATTASKTEVRHQTSQPSFDSRKAFTGSIIEHAENIKPTTRQQSSASSQDSGSQSSKPVSRFKMQRR*

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