SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G03750 | AT | Annotation by Michelle Graham. TAIR10: switch 2 | chr1:937920-941068 FORWARD LENGTH=862 | SoyBase | E_val: 0 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0387 | KOG | Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) | JGI | ISS | |
| PTHR10799 | Panther | ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED | JGI | ISS | |
| PTHR10799:SF65 | Panther | CHROMODOMAIN HELICASE DNA BINDING PROTEIN | JGI | ISS | |
| PF00176 | PFAM | SNF2 family N-terminal domain | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| UniRef100_B9MYG3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9MYG3_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LS51 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LS51_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g13180 not represented in the dataset |
Glyma12g13180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g44541 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g115800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g13180.1 sequence type=CDS gene model=Glyma12g13180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCTGCGGGCTCTGAAGGAATCTCTGCGACCTTGCTCAACCCTAAAACCCTCTTCCTCTTCCTCAATTACTCAAACACAGCCTTATTCAATTCTCCGCGAAAGCGATTCCCTTTTTCCAATCCATAGAAAGCCCCCTAAATCCTCCCTTTCCCACCAGCTTCGCCGCCTCGACGATTCACTAACCCAAACCCACTCCAAAACCCTACAACAGCAACAACAACAGCAAGAAGAAAAAGAAGAAGAACCAGAGATTAAGATAACAAAATTCGCTTCACCCAAATTGCCACAGTTTCAATTTGATCACACTGGACCCTTTGAGCCTCTTCTCTTGTCTTCGCATGGAGAATTTCCCCCGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGAGGGAGTGAGGTTTTTGTATGGGTTGTACAAGAACAATCATGGAGGCATACTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCCGCCGTCTTTGCTAAAGAAGGACATTCTACTCTAAATGAAAACCATGTAGAGAAAAGAGATCCTGCATTAATAATTTGCCCCACTTCTGTTATCCACAACTGGGAGAGCGAATTCTCCAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAACCGGAACCTGATATATGATAAATTGGAAGCAAATGAAGTGGAAATACTCATTACCAGTTTTGACACATACAGGATTCATGGAAGTTCGTTGTTAGATATTAACTGGAACATTGTGATTATCGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTAAGACGCTATGGTCTCACTGGGACTGCAATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGATTGGGTTGCACCTGGATCCCTTGGAACACGGGAACATTTTCGTGAGTTCTATGATGAACCCCTTAAGCATGGCCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGCAGTTCTTCATAAATATCTGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTTTGTGCAATGAGTGATGTGCAAAAACGTGTTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACCTGCCTTGCAGTTGTGGTAGCCCTCTTACTCAAGTCGAATGTTGCAAGAGGATAGTACCAGATGGAGCTATATGGCCTTACCTGCATAGAGATAACCCTGATGGTTGTGATTCATGCCCGTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAACCACCTTGAGCTGATTAAGCCAAATCCCAAAGATGATCCAGACAAACAAAATAAAGATGCAGAGTTTGCTGCTGCAGTCTTTGGCCCTGATATTGATTTAGTGGGGGGGAATACACAAAATGAAAGCTTCATGGGTCTCAGTGATGTGACACATTGTGGAAAAATGCGAGCACTTGAAAAACTATTGTACTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGCTCCACTCCAACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTATTCCTAATATCAACTCGTGCGGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAACCCTGCACAAGACTTACAAGCTCAGGACAGGTCCTTTCGTTTTGGACAGAAGCGGCATGTTGTGGTGTTCCGTCTGCTTGCAGCTGGTTCACTTGAAGAACTTGTATACTCTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGGAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGAGAGCTTTTTGGGATTTCCAATTTATTTCGAGATTTATCTGATAAGTTATTTACCGGTGAGATCATTGAATTGCATGAAGAACATGGGCATGAAACAGAACAACCGGAAGAAGTAAATCTGTCAGAAGAAGAAACAAGTTCATCAGTACTGGAATCAGAAACCAGATTGTGTAACAAATCTGTGAGGGATGCAACAAGTAAACCAGATCTTGTAGACCTTGGCATTGTCTATACTCATCGCAATGAAGACATTGTCAACTTCGGCCCAGGGATTCAAGGGAAAATAGATACTAGCATCCCCTTAGATGATAGCCTAGTCAAGCCAAGCATCTCTTTGGATTTGGACCACCAAAGAAAAAAACCAGATAGTATACCTAAAAAACAGAAAGTTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGGCTCCTTGCCCAGTCTCTGGGCATGGGAGAGCTTGCTTTTAGCAAATGGTTGCTATCAGCGACTCCACTCGAGAGAGAAAAAGTGCTTCTTGACTTCAAGAAGAAAAAAAAGATACCTAACGGTTGA
>Glyma12g13180.1 sequence type=predicted peptide gene model=Glyma12g13180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLRALKESLRPCSTLKPSSSSSITQTQPYSILRESDSLFPIHRKPPKSSLSHQLRRLDDSLTQTHSKTLQQQQQQQEEKEEEPEIKITKFASPKLPQFQFDHTGPFEPLLLSSHGEFPPVQVPASINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAVFAKEGHSTLNENHVEKRDPALIICPTSVIHNWESEFSKWSNFSVSIYHGANRNLIYDKLEANEVEILITSFDTYRIHGSSLLDINWNIVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTAMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRVYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGAIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQNKDAEFAAAVFGPDIDLVGGNTQNESFMGLSDVTHCGKMRALEKLLYSWFSQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTGEIIELHEEHGHETEQPEEVNLSEEETSSSVLESETRLCNKSVRDATSKPDLVDLGIVYTHRNEDIVNFGPGIQGKIDTSIPLDDSLVKPSISLDLDHQRKKPDSIPKKQKVPLIDERKRTQYRLLAQSLGMGELAFSKWLLSATPLEREKVLLDFKKKKKIPNG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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