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Report for Sequence Feature Glyma12g13155

Feature Type:gene_model
Chromosome:Gm12
Start:11516496
stop:11519043
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g13155
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27050AT Annotation by Michelle Graham. TAIR10: homeobox protein 54 | chr1:9393706-9394408 FORWARD LENGTH=205 SoyBaseE_val: 2.00E-25ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
UniRef100_G7K9R0UniRef Annotation by Michelle Graham. Most informative UniRef hit: RCC1 and BTB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K9R0_MEDTR SoyBaseE_val: 6.00E-55ISS
UniRef100_UPI000233CBE4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CBE4 related cluster n=1 Tax=unknown RepID=UPI000233CBE4 SoyBaseE_val: 5.00E-78ISS

Expression Patterns of Glyma12g13155
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g13155 not represented in the dataset
Glyma12g13155 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g13155 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g115700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g13155
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g13155
>Glyma12g13155.1   sequence type=CDS   gene model=Glyma12g13155   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAGGTGGATAATTGTGTCATTTACGGAGACCCGTAGCCATGATTTGTGTCAATCATATTTTGAGCCCTTTATTCGTTCACACCATGAATTGACTAATGCAGACAAGGCTCAGGTCGACCGCGACGCCGTCAGATACATCACCTACCGGACCAAGGACTCCGCGGACGCTGCCATCGTCGCCGGCCTCGACCCCACCTTCGGAATCACCGTTAACTCTAAAACGGTCCAGGTGTTGTGGGCAACATACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAGCAGGAACAAAGGTTCTATGTCAAAGCTTGTGCGTGCTGAGGTACCTTTGAGCAAGCATGGAAGAGGTAACAGACTTGCTTCACCCATAGGGAATACCAAACGTAGCAAGGATAGCTCAGGTAGCTCAGTTTTAGAAGTGTCTTTCAAGGGCAGAGAAATTGTTGCTTATGATGATATCCTCTGA
Predicted protein sequences of Glyma12g13155
>Glyma12g13155.1   sequence type=predicted peptide   gene model=Glyma12g13155   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRWIIVSFTETRSHDLCQSYFEPFIRSHHELTNADKAQVDRDAVRYITYRTKDSADAAIVAGLDPTFGITVNSKTVQVLWATYPLAMWREGVGNSRNKGSMSKLVRAEVPLSKHGRGNRLASPIGNTKRSKDSSGSSVLEVSFKGREIVAYDDIL*






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