SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma12g13130): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma12g13130): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma12g13130

Feature Type:gene_model
Chromosome:Gm12
Start:11482178
stop:11484186
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g13130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28365AT Annotation by Michelle Graham. TAIR10: early nodulin-like protein 3 | chr4:14033012-14033688 REVERSE LENGTH=199 SoyBaseE_val: 2.00E-44ISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
PF02298PFAM Plastocyanin-like domain JGI ISS
UniRef100_G7JTU3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Early nodulin-like protein n=1 Tax=Medicago truncatula RepID=G7JTU3_MEDTR SoyBaseE_val: 1.00E-56ISS
UniRef100_I1LS50UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LS50_SOYBN SoyBaseE_val: 9.00E-128ISS

Expression Patterns of Glyma12g13130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g13130 not represented in the dataset
Glyma12g13130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g13130
ParalogEvidenceComments
Glyma06g44550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g13130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g115600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g13130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g13130
>Glyma12g13130.1   sequence type=CDS   gene model=Glyma12g13130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTCCATAGGTTTCTGGGGCTCTTGATTTTGATGACTCCGATCATGTTTGTTCAAGTTGTGGCAAGGCAATTCGATGTTGGTGGCAAAGATGGGTGGGTGCTGAAGCCTACTGAAGACTACGATCACTGGGCTCAAAGAAACAGATTTCAAGTCAATGACACTCTCCATTTCAAGTACAATAAAGGGAGTGATTCGGTTGTGGTGGTGAAGAAGGAGGACTTCGATTCATGCAACATCAACAACCCCATACAAAAGATGGATGGTGGTGATTCAACTTTCCAACTTTCCAACTCTGGCCTTTTTTACTTCATAAGTGGCAACCTTGACAACTGTAAAAATGGTCAAAAGCTCATTGTTCTTGTCATGGCTGCGAGGCAACCAATTCCTAGGGCTGCGCTGCCACCACAGAAGATTCCGGCAACCAGTTTGACTTCTCCGGCACCGACGCCGACGGACAATTCGGGTTCAGGGAGGGTTGGTGTGAGTGTGGGGATTGTTTTGATGTTCACTGGCTTTGTTGGGTTGGTTTAG
Predicted protein sequences of Glyma12g13130
>Glyma12g13130.1   sequence type=predicted peptide   gene model=Glyma12g13130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFHRFLGLLILMTPIMFVQVVARQFDVGGKDGWVLKPTEDYDHWAQRNRFQVNDTLHFKYNKGSDSVVVVKKEDFDSCNINNPIQKMDGGDSTFQLSNSGLFYFISGNLDNCKNGQKLIVLVMAARQPIPRAALPPQKIPATSLTSPAPTPTDNSGSGRVGVSVGIVLMFTGFVGLV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo