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Report for Sequence Feature Glyma12g13090

Feature Type:gene_model
Chromosome:Gm12
Start:11449237
stop:11449791
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g13090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10250AT Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein | chr4:6370537-6371124 FORWARD LENGTH=195 SoyBaseE_val: 2.00E-57ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR11527Panther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY JGI ISS
PTHR11527:SF14Panther LETHAL(2) ESSENTIAL FOR LIFE - RELATED JGI ISS
PF00011PFAM Hsp20/alpha crystallin family JGI ISS
UniRef100_Q39820UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hsp22.5 n=1 Tax=Glycine max RepID=Q39820_SOYBN SoyBaseE_val: 1.00E-79ISS
UniRef100_UPI000233B48EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B48E related cluster n=1 Tax=unknown RepID=UPI000233B48E SoyBaseE_val: 1.00E-102ISS

Expression Patterns of Glyma12g13090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g13090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g115300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g13090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g13090
>Glyma12g13090.1   sequence type=CDS   gene model=Glyma12g13090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGCACTTTTTAGTACTAGTACCACTGATCTTGCTTGTTTTTGCTGGTTTTCCATCCAAAGCAAAAGGCTCTCTGCTACCATTCACAAATCATCCAAATACCCTCTTGGCTGATCTATGGTCTAATCATTTCCCTGATCCATTTCGCGTGTTAGAGCAAATCCCATTTGGGGTTGACAAAGATGAAACATTCACAGCTCTATCATCACATGCAAGAGTGGATTGGAAGGAGACACCAGAAGGGCATGTCATAATGCTAGATGTGCCAGGGTTGAAGAGAGATGAGATCAAGATAGAAGTGGAAGGGAATAGAGTGCTGAGAGTGAGTGGAGAAAGGAAGAGGGAAGAGGAGAAGGAAGGGGATCATTGGCATAGAGTGGAGAGATCCTATGGCAAATTCTGGAGGCATTTCAAGGTGCCAGACAATGTGGACTCTCAAGGTCAATTATAA
Predicted protein sequences of Glyma12g13090
>Glyma12g13090.1   sequence type=predicted peptide   gene model=Glyma12g13090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHFLVLVPLILLVFAGFPSKAKGSLLPFTNHPNTLLADLWSNHFPDPFRVLEQIPFGVDKDETFTALSSHARVDWKETPEGHVIMLDVPGLKRDEIKIEVEGNRVLRVSGERKREEEKEGDHWHRVERSYGKFWRHFKVPDNVDSQGQL*






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