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Report for Sequence Feature Glyma12g13051

Feature Type:gene_model
Chromosome:Gm12
Start:11429191
stop:11429829
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g13051
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G26820AT Annotation by Michelle Graham. TAIR10: ribonuclease 3 | chr1:9292760-9293722 REVERSE LENGTH=222 SoyBaseE_val: 3.00E-17ISS
GO:0007568GO-bp Annotation by Michelle Graham. GO Biological Process: aging SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0004521GO-mf Annotation by Michelle Graham. GO Molecular Function: endoribonuclease activity SoyBaseN/AISS
GO:0033897GO-mf Annotation by Michelle Graham. GO Molecular Function: ribonuclease T2 activity SoyBaseN/AISS
PF00445PFAM Ribonuclease T2 family JGI ISS
UniRef100_C6SZF6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZF6_SOYBN SoyBaseE_val: 1.00E-31ISS
UniRef100_G7KFA7UniRef Annotation by Michelle Graham. Most informative UniRef hit: LCR-like protein n=1 Tax=Medicago truncatula RepID=G7KFA7_MEDTR SoyBaseE_val: 6.00E-23ISS

Expression Patterns of Glyma12g13051
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g13051 not represented in the dataset
Glyma12g13051 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g13051 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g115100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g13051
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g13051
>Glyma12g13051.1   sequence type=CDS   gene model=Glyma12g13051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACCCAACTTTTCCTTTTTATCTAAGCTTTTGATACTGCAATATCTATCAGTTTTATGCATTTCTCAGGAATTTGATTTCTTCTACTTTGTTCAGCAGTGGCCAGGAGCATACTGTGACACAAAGCAGAGCTGCTGCTATCCTAAGACTGGGAAACCTGCTATCTATCATATTTTGGTGCTAGAGGTAAATTGCCTTGCCTCCACGCTCAAAGTCTTAAATCTCACTTAA
Predicted protein sequences of Glyma12g13051
>Glyma12g13051.1   sequence type=predicted peptide   gene model=Glyma12g13051   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPNFSFLSKLLILQYLSVLCISQEFDFFYFVQQWPGAYCDTKQSCCYPKTGKPAIYHILVLEVNCLASTLKVLNLT*






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