Glyma12g13041 - SoyBase

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Report for Sequence Feature Glyma12g13041

Feature Type:	gene_model
Chromosome:	Gm12
Start:	11424027
stop:	11428240
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g13041

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19260	AT	Annotation by Michelle Graham. TAIR10: TTF-type zinc finger protein with HAT dimerisation domain \| chr1:6657260-6659569 REVERSE LENGTH=769	SoyBase	E_val: 1.00E-155	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR11697	Panther	GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN	JGI		ISS
PTHR11697:SF9	Panther	TRANSPOSASE-LIKE PROTEIN	JGI		ISS
UniRef100_G7I4E9	UniRef	Annotation by Michelle Graham. Best UniRef hit: HAT family dimerization domain containing protein n=1 Tax=Medicago truncatula RepID=G7I4E9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7I4E9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HAT family dimerization domain containing protein n=1 Tax=Medicago truncatula RepID=G7I4E9_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g13041

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g13041 not represented in the dataset	Glyma12g13041 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g13041 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g115000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g13041

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g13041

Limit To All Plant Sequences

>Glyma12g13041.1   sequence type=CDS   gene model=Glyma12g13041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTTATTAAAGTTGTTGATTATGAATTGTTGGAAACAGATCCAGGAATTAGGCCTCCAATTTCAAACTATCATCCTGACATCCAAAATGAGACGTAGATTTGGCAAAAATTGGTTTGATTTGTATGATTGGATTGATTATAGTGAATCTAAGGACCTAGCATTTTGCTTGCCATGTTTTTTGTTTAAGAATGTCTCTAAATACGGGGGAGATCACTTTGTGACTGAGGGGTTTAGTGATTGGAAGAATTCTCAAAGATTGGCTAATCATGCTACTTCTTCCAATAGTCATGTTGATTGTGTGCATATGAGTTATGCTCTCATGAACCCAAACCAAAGTATTAAGGCTGCATTTGTTAATCAAACTAAACAAAGGAATTCTGAATATCGTGTTCGTGTAAACACATCTCTTATAGCTACTAAGTTTCTTTTGAGGTGTGGCATGCCATTTAGAGGGAGTGACGAGTCCTTTAACTCTTTATTTAAGGGGCCATTTCTTGAGTTGGTGGACACTTTAAAGGAAATTAACCCAGAGATAGCTAATGTAATAGATTGTGCTCCAGGCAATAACTTTATGACTGCTCCTACGATTCAAAAGGATCTTGCTGCTGCTTGTGCATGTGAAATAACTCAACAAATTGTTTGTGATATTGCGGATGATGTATTTTGTGTTTTGATTGATGAATCTGGTGATGTTACTGGTAAAGAACAAATGGTTGTTGTTATTCGCTATGTTAATAGTGAAGGTTTGGTAAAAGAAAGGTTTCTTGGGATTGTTAGTGTTAAAGAAACAAGTGCTAAGTCACTTAAGGAGGCACTTGAGAAGTTGTTGTCTATTAATGGCTTGAGTTTATCTAGCATAAGGGGGCAAAGATATGATGGAGCTAGCAATATGCGAGGTAAATTTGGTGGTTTGAGAACTTTAATTCAAAATGAAAATCCATCTGCTTATTATGTGCATTGTTTTGCCCATCAACTTCAATTGGCACTTGTTGCATGTGCTAAGACTCACAAAGATGTTAGTGGTTTTTTCGGTAAGGTCAATATGCTTGTTAATTTCATACGATCTTCTAATAAGAGACAAGAATTGCTTCGGGACAAACAAGTATCTCAATTTGCTAAATTGATTGAAGAGGGTCAGATAGAGATTGATAGTGGATTAAATCAAGAATCGTCTATTGCTAGAGCGGGTGACACTCGTTGGGGTTACCACTTTAGGACTCTCACTAGTTTGATGACTATATATGGTGCCATTATTGAGGTACTTGAAGAAGTCGGGAAAGATACGTCATTTGAAAAATATGGTGAAACTATGCTTTTGCTAGATGTGCTTCAGTCCTTTGATTTTATTTTCATGTTATACATGATGCGTGATCAAGATCTTTTGAATGCTTTATCACTTGTCAAAGCCACCAAAGAAGAATTACAAGAAATGAGGAATGATGGATGGGAAGAACTTATATCTAAGGTTATGGAAATTTGCAATAAGCATGATATTGACGTGCCTGATTTGGATGCACCGTATTTGCATGAGCTCAATGCTAGGTTTGATGAAGAGAATACTGAACTTTTACAATGTGTTTCATGTTTGAGTCCCTCATCATCATTTGAAGCTTTTGATGTGCAAAAATTGTTGAGGATGGTTGAACTTTATCCAAATGATTTTGTAGATGTGCCGGAAGTGGTGGTGCGACATCAGCTTCAGAATTATGTTAGAAATTTGGCTTTAGTCTTGCCGGTAGCAACTGCAAGCGTGGTACATGTTTTTTCAGCTATGAAGTTTGTGAAGAGTCAGCTATGTAACAAAATGGGTGATCAATGGTTAAATGATCTGAAATTCTGA

Predicted protein sequences of Glyma12g13041

Limit To All Plant Sequences

>Glyma12g13041.1   sequence type=predicted peptide   gene model=Glyma12g13041   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLLKLLIMNCWKQIQELGLQFQTIILTSKMRRRFGKNWFDLYDWIDYSESKDLAFCLPCFLFKNVSKYGGDHFVTEGFSDWKNSQRLANHATSSNSHVDCVHMSYALMNPNQSIKAAFVNQTKQRNSEYRVRVNTSLIATKFLLRCGMPFRGSDESFNSLFKGPFLELVDTLKEINPEIANVIDCAPGNNFMTAPTIQKDLAAACACEITQQIVCDIADDVFCVLIDESGDVTGKEQMVVVIRYVNSEGLVKERFLGIVSVKETSAKSLKEALEKLLSINGLSLSSIRGQRYDGASNMRGKFGGLRTLIQNENPSAYYVHCFAHQLQLALVACAKTHKDVSGFFGKVNMLVNFIRSSNKRQELLRDKQVSQFAKLIEEGQIEIDSGLNQESSIARAGDTRWGYHFRTLTSLMTIYGAIIEVLEEVGKDTSFEKYGETMLLLDVLQSFDFIFMLYMMRDQDLLNALSLVKATKEELQEMRNDGWEELISKVMEICNKHDIDVPDLDAPYLHELNARFDEENTELLQCVSCLSPSSSFEAFDVQKLLRMVELYPNDFVDVPEVVVRHQLQNYVRNLALVLPVATASVVHVFSAMKFVKSQLCNKMGDQWLNDLKF*

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