SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G34050 | AT | Annotation by Michelle Graham. TAIR10: INVOLVED IN: protein complex assembly; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304 Blast hits to 304 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 112; Plants - 39; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr2:14382843-14384198 REVERSE LENGTH=248 | SoyBase | E_val: 1.00E-119 | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| KOG3281 | KOG | Mitochondrial F1-ATPase assembly protein | JGI | ISS | |
| PTHR13126 | Panther | CHAPERONE ATP11 | JGI | ISS | |
| PF06644 | PFAM | ATP11 protein | JGI | ISS | |
| UniRef100_I1LS43 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LS43_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O22958 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP synthase mitochondrial F1 complex assembly factor 1 n=1 Tax=Arabidopsis thaliana RepID=O22958_ARATH | SoyBase | E_val: 5.00E-117 | ISS |
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Glyma12g12960 not represented in the dataset |
Glyma12g12960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g44620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g114600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g12960.1 sequence type=CDS gene model=Glyma12g12960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAAGGGTGTCTCCAACCTCCACAATTTGGAGGACCATAGTCTCCAAGGCCAGAAAAAACGTGTTTTTCATCAACGACCCTTTTGCTGCGCGCTCCTTCTCTGCGGTTCCCGTCGTGGCAGCCGCCAAGAAATTGCATCAACCAGAGATTCCAAGCGATTTCCAGAAATGGGGTTCGGTTGGATTCTGCAGAACGTCGAAATTTGCCTCTGGGTTCAATCCACTTCAACCGAAGCCGTTGGATTCTATTGTAGATGTCCACAGATTGAAAGATCGGTATCCTGAAGACATTGCTTCTGTTTGGGATGATTATCACATAGGAAGAGGTCATATTGGAGCAACTATGAAAGCAAAACTTTATCACTTGCTGGAGCATAGAGCTTCAGAATGCCGATATTTTGTCATTCCTTTATGGAGGGGAAGTGGATACACGACAATGTTTGTTCAAGTCCAGACGCCACACATGATTTTTACAGGTCTTGAAGATTACAAGGCCAGAGGAACACAAGCAGCCCCTTACTTTACTTTGACCTTTTACACAGAATTTGCAGAGAGCAAGGACTTGGTACTGATCCGTGGGGATGTTGTATTTACCAGCAAGCTTACTGACCCAGAAGCAAAATGGCTTTTGGAAACTGCTCAGTCTTTTTATTTGAATGATGCGAGGTACAAACTGGTTGAGAGGTTCAACAGGCAAACACATGATTTTGAGTTCAAAGATGTCTTGCAAGTATTGGACATGCCTATTTTGTAA
>Glyma12g12960.1 sequence type=predicted peptide gene model=Glyma12g12960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQRVSPTSTIWRTIVSKARKNVFFINDPFAARSFSAVPVVAAAKKLHQPEIPSDFQKWGSVGFCRTSKFASGFNPLQPKPLDSIVDVHRLKDRYPEDIASVWDDYHIGRGHIGATMKAKLYHLLEHRASECRYFVIPLWRGSGYTTMFVQVQTPHMIFTGLEDYKARGTQAAPYFTLTFYTEFAESKDLVLIRGDVVFTSKLTDPEAKWLLETAQSFYLNDARYKLVERFNRQTHDFEFKDVLQVLDMPIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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