SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G22930 | AT | Annotation by Michelle Graham. TAIR10: pyrimidin 4 | chr4:12019315-12021200 FORWARD LENGTH=377 | SoyBase | E_val: 0 | ISS |
| GO:0019856 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleobase biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004151 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dihydroorotase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0016812 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides | SoyBase | N/A | ISS |
| KOG2902 | KOG | Dihydroorotase | JGI | ISS | |
| PTHR11647 | Panther | AMINOHYDROLASE | JGI | ISS | |
| PTHR11647:SF42 | Panther | JGI | ISS | ||
| PF01979 | PFAM | Amidohydrolase family | JGI | ISS | |
| UniRef100_A5JJV0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial dihydroorotase (Fragment) n=1 Tax=Vicia faba RepID=A5JJV0_VICFA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LS42 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LS42_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma12g12950 not represented in the dataset |
Glyma12g12950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g44630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g114500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g12950.2 sequence type=transcript gene model=Glyma12g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCCAGTCCATTGAGGAACACTATAGTCCATAAGTCATAACCAAAGATACCAATCTCAACGCGTAACAAAATATCCCAAACTCTCACTCGTCGACGGCCACCGGATCGACCTCAATTCGCCGTCGTCCAATCGCTCTCAGTTCCACCGCCTCCGCCGCCGGCATCCAATTCAGTTTGGCCTTGCATCTCTCTCAGGTCCCTATCTTCTTCCATCCAATTAGTGTAGTTCTGACGTTTCGATGTTGCGGTTGCGTGTTTCATCGGATCCTTCTGTTTTGCGGTTGAGCATTTCGAATTGCAATTTTCCTTTGAGCTTTTCATTTCACTGGTAGATGAAACCACATTCTTCGACTGAAATAGTGTTCAAGGAGTGTGTGTGCGCGCGCGCGTGTATTAAGATTCTACTAAAAAAAAGGTTGATCAGCGTAAAGATGGAGCTCACTATTACACAGCCTGATGATTGGCATCTTCACCTCCGTGATGGTTCCCTTCTTGAAGCTGTCCTCCCTCACAGTGCGAAGCATTTTGGAAGGGCCATAGTAATGCCAAATTTGAAACCACCCATCACTACCACGTCTGCTGCTGTCGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAAAGATAGCAACTTCACTCCTCTCATGTCACTTTACCTCACAGACGTGACTACCCCTGATGAGATTAAACTTGCAAAAAAAAGTGGACTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCTACAACAAACTCCCAAGATGGTGTTACAGATCTTTTTGGAAATTGTTTTTCTGTTCTTGAGGAAATGGCTGAGCAAAATTTACCATTATTGGTTCACGGAGAGGTTACAGATTCAAACGTTGATATTTTTGACCGAGAAAAAGTCTTTATTGAAACAATTTTAATGCCTTTAATTCAAAGACTTCCACAGCTGAAGGTTGTGATGGAGCATATCACTACTGCAGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACTGTTACACCACAGCATCTTCTTCTGAATCGTAATGCTTTGTTCCAAGGTGGCTTACAGCCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCATAGACAGGCTATTGTTTCGGCTGTCACTAGTGGAAGTAAACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATGTTCCTGTGGATGTGCTGGCATATACAACTCACCGGTTGCTCTATCACTATATGCCAAAGTTTTTGAAGAGGCTGGTGCACTTGATAAGCTAGAGGCTTTTACAAGCTTTAACGGACCTGACTTCTATGGCCTCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAAGCTCCTTGGAAAGTACCTGATTATTTGTCATTTCCATTTGGAGACATCGTTCCCATGTTTGCTGGTGAAACCCTTGAATGGGAGGCATTGCCTTGTTGATTTGCTGTGTCTATTTGAAAGTTTGGTATCCTTCAGCTTAAATTATTGATTGCTGAGATGAGAATTTATGCAGCGTTCAAGAACTAGAGTCAAGCAATTTTGTTCTAATTTTATCAGTCAGTTCTGCATTTATTTTGCAGATTGTTCTCATTTCTATTTCCTAGGTCAGGTGAATTTAAGTATGAACCAGAACACCCACTGTGACTAATAAATTATGGGAATTTATATAGTATTCAGAGCTATGGTAATTTTGTAGTTCTAATTTGATCAATCAACTATGCATGAATTTTTCAGATTTGCCTTATTTCCATTTCCTGTTCATGGGTCTGAGCTGAATTCCTGTATGAATCCAAGTGCCCCTTGGCCACATGACACCGCATCAAATTTTAAAATCGTATGGCA >Glyma12g12950.3 sequence type=transcript gene model=Glyma12g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAGAGAATAGCAAAACAAGCCCAGTCCATTGAGGAACACTATAGTCCATAAGTCATAACCAAAGATACCAATCTCAACGCGTAACAAAATATCCCAAACTCTCACTCGTCGACGGCCACCGGATCGACCTCAATTCGCCGTCGTCCAATCGCTCTCAGTTCCACCGCCTCCGCCGCCGGCATCCAATTCAGTTTGGCCTTGCATCTCTCTCAGGTATTAAGATTCTACTAAAAAAAAGGTTGATCAGCGTAAAGATGGAGCTCACTATTACACAGCCTGATGATTGGCATCTTCACCTCCGTGATGGTTCCCTTCTTGAAGCTGTCCTCCCTCACAGTGCGAAGCATTTTGGAAGGGCCATAGTAATGCCAAATTTGAAACCACCCATCACTACCACGTCTGCTGCTGTCGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAAAGATAGCAACTTCACTCCTCTCATGTCACTTTACCTCACAGACGTGACTACCCCTGATGAGATTAAACTTGCAAGTGAAAAAAAGTGGACTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCTACAACAAACTCCCAAGATGGTGTTACAGATCTTTTTGGAAATTGTTTTTCTGTTCTTGAGGAAATGGCTGAGCAAAATTTACCATTATTGGTTCACGGAGAGGTTACAGATTCAAACGTTGATATTTTTGACCGAGAAAAAGTCTTTATTGAAACAATTTTAATGCCTTTAATTCAAAGACTTCCACAGCTGAAGGTTGTGATGGAGCATATCACTACTGCAGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACTGTTACACCACAGCATCTTCTTCTGAATCGTAATGCTTTGTTCCAAGGTGGCTTACAGCCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCATAGACAGGCTATTGTTTCGGCTGTCACTAGTGGAAGTAAACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATGTTCCTGTGGATGTGCTGGCATATACAACTCACCGGTTGCTCTATCACTATATGCCAAAGTTTTTGAAGAGGCTGGTGCACTTGATAAGCTAGAGGCTTTTACAAGCTTTAACGGACCTGACTTCTATGGCCTCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAAGCTCCTTGGAAAGTACCTGATTATTTGTCATTTCCATTTGGAGACATCGTTCCCATGTTTGCTGGTGAAACCCTTGAATGGGAGGCATTGCCTTGTTGATTTGCTGTGTCTATTTGAAAGTTTGGTATCCTTCAGCTTAAATTATTGATTGCTGAGATGAGAATTTATGCAGCGTTCAAGAACTAGAGTCAAGCAATTTTGTTCTAATTTTATCAGTCAGTTCTGCATTTATTTTGCAGATTGTTCTCATTTCTATTTCCTAGGTCAGGTGAATTTAAGTATGAACCAGAACACCCACTGTGACTAATAAATTATGGGAATTTATATAGTATTCAGAGCTATGGTAATTTTGTAGTTCTAATTTGATCAATCAACTATGCATGAATTTTTCAGATTTGCCTTATTTCCATTTCCTGTTCATGGGTCTGAGCTGAATTCCTGTATGAATCCAAGTGCCCCTTGGCCACATGACACCGCATCAAATTTTAAAATCGTATGGCA
>Glyma12g12950.1 sequence type=CDS gene model=Glyma12g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCTCACTATTACACAGCCTGATGATTGGCATCTTCACCTCCGTGATGGTTCCCTTCTTGAAGCTGTCCTCCCTCACAGTGCGAAGCATTTTGGAAGGGCCATAGTAATGCCAAATTTGAAACCACCCATCACTACCACGTCTGCTGCTGTCGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAAAGATAGCAACTTCACTCCTCTCATGTCACTTTACCTCACAGACGTGACTACCCCTGATGAGATTAAACTTGCAAAAAAAAGTGGACTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCTACAACAAACTCCCAAGATGGTGTTACAGATCTTTTTGGAAATTGTTTTTCTGTTCTTGAGGAAATGGCTGAGCAAAATTTACCATTATTGGTTCACGGAGAGGTTACAGATTCAAACGTTGATATTTTTGACCGAGAAAAAGTCTTTATTGAAACAATTTTAATGCCTTTAATTCAAAGACTTCCACAGCTGAAGGTTGTGATGGAGCATATCACTACTGCAGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACTGTTACACCACAGCATCTTCTTCTGAATCGTAATGCTTTGTTCCAAGGTGGCTTACAGCCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCATAGACAGGCTATTGTTTCGGCTGTCACTAGTGGAAGTAAACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATGTTCCTGTGGATGTGCTGGCATATACAACTCACCGGTTGCTCTATCACTATATGCCAAAGTTTTTGAAGAGGCTGGTGCACTTGATAAGCTAGAGGCTTTTACAAGCTTTAACGGACCTGACTTCTATGGCCTCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAAGCTCCTTGGAAAGTACCTGATTATTTGTCATTTCCATTTGGAGACATCGTTCCCATGTTTGCTGGTGAAACCCTTGAATGGGAGGCATTGCCTTGTTGA >Glyma12g12950.2 sequence type=CDS gene model=Glyma12g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACCACATTCTTCGACTGAAATAGTGTTCAAGGAGTGTGTGTGCGCGCGCGCGTGTATTAAGATTCTACTAAAAAAAAGGTTGATCAGCGTAAAGATGGAGCTCACTATTACACAGCCTGATGATTGGCATCTTCACCTCCGTGATGGTTCCCTTCTTGAAGCTGTCCTCCCTCACAGTGCGAAGCATTTTGGAAGGGCCATAGTAATGCCAAATTTGAAACCACCCATCACTACCACGTCTGCTGCTGTCGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAAAGATAGCAACTTCACTCCTCTCATGTCACTTTACCTCACAGACGTGACTACCCCTGATGAGATTAAACTTGCAAAAAAAAGTGGACTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCTACAACAAACTCCCAAGATGGTGTTACAGATCTTTTTGGAAATTGTTTTTCTGTTCTTGAGGAAATGGCTGAGCAAAATTTACCATTATTGGTTCACGGAGAGGTTACAGATTCAAACGTTGATATTTTTGACCGAGAAAAAGTCTTTATTGAAACAATTTTAATGCCTTTAATTCAAAGACTTCCACAGCTGAAGGTTGTGATGGAGCATATCACTACTGCAGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACTGTTACACCACAGCATCTTCTTCTGAATCGTAATGCTTTGTTCCAAGGTGGCTTACAGCCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCATAGACAGGCTATTGTTTCGGCTGTCACTAGTGGAAGTAAACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATGTTCCTGTGGATGTGCTGGCATATACAACTCACCGGTTGCTCTATCACTATATGCCAAAGTTTTTGAAGAGGCTGGTGCACTTGATAAGCTAGAGGCTTTTACAAGCTTTAACGGACCTGACTTCTATGGCCTCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAAGCTCCTTGGAAAGTACCTGATTATTTGTCATTTCCATTTGGAGACATCGTTCCCATGTTTGCTGGTGAAACCCTTGAATGGGAGGCATTGCCTTGTTGA >Glyma12g12950.3 sequence type=CDS gene model=Glyma12g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATTAAACTTGCAAGTGAAAAAAAGTGGACTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCTACAACAAACTCCCAAGATGGTGTTACAGATCTTTTTGGAAATTGTTTTTCTGTTCTTGAGGAAATGGCTGAGCAAAATTTACCATTATTGGTTCACGGAGAGGTTACAGATTCAAACGTTGATATTTTTGACCGAGAAAAAGTCTTTATTGAAACAATTTTAATGCCTTTAATTCAAAGACTTCCACAGCTGAAGGTTGTGATGGAGCATATCACTACTGCAGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACTGTTACACCACAGCATCTTCTTCTGAATCGTAATGCTTTGTTCCAAGGTGGCTTACAGCCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCATAGACAGGCTATTGTTTCGGCTGTCACTAGTGGAAGTAAACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATGTTCCTGTGGATGTGCTGGCATATACAACTCACCGGTTGCTCTATCACTATATGCCAAAGTTTTTGAAGAGGCTGGTGCACTTGATAAGCTAGAGGCTTTTACAAGCTTTAACGGACCTGACTTCTATGGCCTCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAAGCTCCTTGGAAAGTACCTGATTATTTGTCATTTCCATTTGGAGACATCGTTCCCATGTTTGCTGGTGAAACCCTTGAATGGGAGGCATTGCCTTGTTGA
>Glyma12g12950.1 sequence type=predicted peptide gene model=Glyma12g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELTITQPDDWHLHLRDGSLLEAVLPHSAKHFGRAIVMPNLKPPITTTSAAVAYRESILKAIPKDSNFTPLMSLYLTDVTTPDEIKLAKKSGLVYGVKLYPAGATTNSQDGVTDLFGNCFSVLEEMAEQNLPLLVHGEVTDSNVDIFDREKVFIETILMPLIQRLPQLKVVMEHITTADAVKFVESCKEGYVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTSGSKRFFLGTDSAPHDRRKKECSCGCAGIYNSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNKSKIKLRKAPWKVPDYLSFPFGDIVPMFAGETLEWEALPC* >Glyma12g12950.2 sequence type=predicted peptide gene model=Glyma12g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKPHSSTEIVFKECVCARACIKILLKKRLISVKMELTITQPDDWHLHLRDGSLLEAVLPHSAKHFGRAIVMPNLKPPITTTSAAVAYRESILKAIPKDSNFTPLMSLYLTDVTTPDEIKLAKKSGLVYGVKLYPAGATTNSQDGVTDLFGNCFSVLEEMAEQNLPLLVHGEVTDSNVDIFDREKVFIETILMPLIQRLPQLKVVMEHITTADAVKFVESCKEGYVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTSGSKRFFLGTDSAPHDRRKKECSCGCAGIYNSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNKSKIKLRKAPWKVPDYLSFPFGDIVPMFAGETLEWEALPC* >Glyma12g12950.3 sequence type=predicted peptide gene model=Glyma12g12950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLNLQVKKSGLVYGVKLYPAGATTNSQDGVTDLFGNCFSVLEEMAEQNLPLLVHGEVTDSNVDIFDREKVFIETILMPLIQRLPQLKVVMEHITTADAVKFVESCKEGYVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTSGSKRFFLGTDSAPHDRRKKECSCGCAGIYNSPVALSLYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNKSKIKLRKAPWKVPDYLSFPFGDIVPMFAGETLEWEALPC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
