Glyma12g12915 - SoyBase

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Report for Sequence Feature Glyma12g12915

Feature Type:	gene_model
Chromosome:	Gm12
Start:	11317185
stop:	11320199
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g12915

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53390	AT	Annotation by Michelle Graham. TAIR10: O-acyltransferase (WSD1-like) family protein \| chr5:21656951-21659207 REVERSE LENGTH=486	SoyBase	E_val: 1.00E-35	ISS
GO:0048446	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol O-acyltransferase activity	SoyBase	N/A	ISS
PF03007	PFAM	Uncharacterised protein family (UPF0089)	JGI		ISS
PF06974	PFAM	Protein of unknown function (DUF1298)	JGI		ISS
UniRef100_G7JTU9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: O-acyltransferase WSD1 n=1 Tax=Medicago truncatula RepID=G7JTU9_MEDTR	SoyBase	E_val: 4.00E-174	ISS
UniRef100_UPI000233CBDD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CBDD related cluster n=1 Tax=unknown RepID=UPI000233CBDD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g12915

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g12915 not represented in the dataset	Glyma12g12915 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g12915

Paralog	Evidence	Comments
Glyma06g44640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g12915 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g114400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g12915

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g12915

Limit To All Plant Sequences

>Glyma12g12915.1   sequence type=CDS   gene model=Glyma12g12915   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAATTCTATGATGAGGTTCAAGAGCCCGTGAGTCCTCATGGACATTATTTCAACAGTTCGGTGATTTGCTCCTATGTTTTTGGCTTTCTTGAAATGGCAGTTCCAATTGATGACTCACAGACTATACCTTTGCTGGAAGATGTCTTCCTCCCCATCAACCCACGTTTCTCCTCTATTATGGTCAGAGACCAAGCTGGTAAAATGAGATGGAAAAGGGTACAAGTGAATCCTGAAGAGCATGTAAAAGTCCCTAGATTTCCTGAATGCAATTCAGCAGAATTGTATGAGCAATATTTTGATGATTATGTGACAAGGATTCTAAATGAACGGACACCTCAGAACAAGCCACTATGGGAAATCCATCTTATTAAGTATCCAACAAGCAGTGCTGCAGGCACAATAATTTTCAAATTTCATCATTCACTTGGAGATGGTTATTCCCTCATGGGTGCCCTTCTTTCTTGTCTTCAAAGAACTGATGACCCTTCTCTTCCACTAACTTTTCCTTCAAATTCACAGCATGCAAAGAAAAACATGTTTAAGTTACATTCAGTGATATCCTCCCTCTTTAGCTCCATGTTAGATTTTGGATCTAGCATAATAAAGACTAGAATGATTGAAGATGACAAAACACCCATAAGGTCTGGATATGAAGGAACTAAGCCTAAGTATTTCACCTTGTCAAACATATCATTATCTCTTGATCATATTAAAGCAATCAAGTCCAATCTTGGAGTGGAGATGCAAAAACCAAAGGTCCAAGGTCTCTGGGGAAATAAAATTTCTTTCTTACAAATACCAATTCCAAAGCTAAGTCAATCCAAAATCTCCAACCCTCTTGAGTTTGTTTGGAATGCCCGTAAACTAATCAAGAGGAAGAGACATTCTTTCAGTGTTTATCTCATAGGTTTGCTCCTGGATTTGGAGATGAAATTAAGAGGTCCTGAGGTTGCGTCTAAAACCTTCTACAACACTCTGGGAAATTGTAGTGTTCTTATATCCAACATGTTTGGGCCAATGGAGCAGATGGCTTTGGCAAATCATCCTGTAAGTGGTGTTTATTTCGCTATGTCGGGTGGACCTCAGAATGTAAACGTAGAAATTATGAGCTATGTGGGAGAATTAAGAATCACCTCGAAAACTCTTAAGGGATTTATAGATGAACAGAAATTCAAGTTTTGCATAGAGAAAGCCTTTGATGAAATATTCAAAGATGCTATGGAGATCTACGAGATACCTAAATGGGACATATATATGGAAATATTGATTAGTGGTGGCGCAGTGTAA

Predicted protein sequences of Glyma12g12915

Limit To All Plant Sequences

>Glyma12g12915.1   sequence type=predicted peptide   gene model=Glyma12g12915   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQFYDEVQEPVSPHGHYFNSSVICSYVFGFLEMAVPIDDSQTIPLLEDVFLPINPRFSSIMVRDQAGKMRWKRVQVNPEEHVKVPRFPECNSAELYEQYFDDYVTRILNERTPQNKPLWEIHLIKYPTSSAAGTIIFKFHHSLGDGYSLMGALLSCLQRTDDPSLPLTFPSNSQHAKKNMFKLHSVISSLFSSMLDFGSSIIKTRMIEDDKTPIRSGYEGTKPKYFTLSNISLSLDHIKAIKSNLGVEMQKPKVQGLWGNKISFLQIPIPKLSQSKISNPLEFVWNARKLIKRKRHSFSVYLIGLLLDLEMKLRGPEVASKTFYNTLGNCSVLISNMFGPMEQMALANHPVSGVYFAMSGGPQNVNVEIMSYVGELRITSKTLKGFIDEQKFKFCIEKAFDEIFKDAMEIYEIPKWDIYMEILISGGAV*

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