Glyma12g12830 - SoyBase

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Report for Sequence Feature Glyma12g12830

Feature Type:	gene_model
Chromosome:	Gm12
Start:	11176210
stop:	11183102
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g12830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53050	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr1:19772574-19775531 FORWARD LENGTH=694	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0600	KOG	Cdc2-related protein kinase	JGI		ISS
PTHR24056	Panther	CELL DIVISION PROTEIN KINASE	JGI		ISS
PTHR24056:SF77	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7IRA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase cdk9 n=1 Tax=Medicago truncatula RepID=G7IRA6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LS35	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LS35_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g12830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g12830

Paralog	Evidence	Comments
Glyma06g44730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g12830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g114000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g12830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g12830

Limit To All Plant Sequences

>Glyma12g12830.1   sequence type=CDS   gene model=Glyma12g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTGCATATGTTCTAAGGCTTCAGCTGTAGAGGACAGCAAGGAAGCTGTCACTGAGAAATTTCAATCGTATAGCACAAGGCCTTCGGAGTTGAATGTTTTGCGGTTGAATTCGACTAGGAGGGTTGATGAGGGTGGGGTGAAAGATGTGTTAATAGTTGGTGGTCATGTGAAAGGTTCATTGATTGACAAGAAGGCCAACGGTTCAGGCCAGTTGTATGGTGATCATGATGCAAAGAAGAAATTAGAGAAGCTGGAATTGACTGTTGTGGATCATATTGGCCCTGGAAGGGTTCCAAAGGCTATTGAAGGAGAGCAAGTTGCAGCTGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCACGGAGTGCGAATACGTTTGAGAGGTTGCATAAAATTGGGCAAGGAACTTACAGTACTGTATATAAGGCACGGGATGTGATTAACCAAAAGTTTGTTGCATTGAAGAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTCAAGTTTATGACAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACATAATTAAATTGGAGGGCTTGATAACGTCACAGATGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGCATCAAATCCTGATATTAAGTTCTCTGAACCGCAGCTGAAATGCTACATGCGGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCATCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAGTCTTAAAGATCGCTGATTTTGGTTTGGCAAGTTTTTATGACCCTCAGCACAATGTTCCATTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTTGGAGCCAATCATTATGGGGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTGGGGGAACTATATACTGGAAGGCCTATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCACCATCTGACGACTATTGGCTTAAATCGCGGTTGTCACATTCCACAGTATTCAGGCCACCACACCATTATAGGCGTTGTGTTGCAGATACATTTAAGGACTACCCATCTACTGCGGTAAAGCTTATAGAGACCCTACTTTCTGTAGAGCCAGCACATCGAGGGACTGCAGCAGCTGCTCTGGAAAGTGAGTTCTTTATGTCGGAGCCTCTGCCTTGTGACCCATCAAGTTTGCCAAAATATGTTCCCAGCAAGGAGATTGATGCTAAATTACGGGATGAAGCCGTAAGGCAAGGAGTTGTTGGAGGTAGGGAACAAAAAGTTGCCTCAGGAGTTAGACAAGAAAAAGGACACAGGGCAAATGTCACAGCAAAAGACAATGCTGACCCAGGCTTAGCAGTGCAGCAAGGACACTGTTCCAGCTCAAGGAACCAAAGTGAATTATCAAACCCTCATAGAGGATCGGTGTCTGGAATTCTGGTTTTCCCTCACAAACAGTCAGAAAAAGAAATGAATGATAATTTCTCTGGGCATCTTTATAAGAGGCCTTCACATTCAGGCCCATTGGTTCCTGGTTCTGTCTGGGCAAAAGGCAGGAAAGAAGTTGATGATGTGCCTCCTGTTTCAAACAGAGTGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGGACTTTCTCTGAAGATCAGGAGGTTAAACCAGTTCACTCGAACCACAGAAAACCAATTGAAGTAAGAAAATCCGTGGAGTCCACTAATGGATCAGAGTCGAGAAGAAGGCACGATCAAAAACAGATTGTTGATCTCAATCAAATTGAAAGTAGAAGGGTCCCGGCTGAAAAATCAACTCCGGGTGGGCGCGAGTCCATGGGAAACAAGATATACCTCTCAGGTCCATTAATGGTTTCGTCAAGCAACATGGATCAGATGCTCAAAGAGCATGACAGAAAGATCCAAGAGTTTTCAAGACGAGCCAGAATTGACAAGTCAAGAGCAAGAGGTGAGAAAGTTTTTGCACAGCGGAAGTAG

Predicted protein sequences of Glyma12g12830

Limit To All Plant Sequences

>Glyma12g12830.1   sequence type=predicted peptide   gene model=Glyma12g12830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCICSKASAVEDSKEAVTEKFQSYSTRPSELNVLRLNSTRRVDEGGVKDVLIVGGHVKGSLIDKKANGSGQLYGDHDAKKKLEKLELTVVDHIGPGRVPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVINQKFVALKKVRFDNLDPESVKFMTREIHVLRRLDHPNIIKLEGLITSQMSRSLYLVFEYMEHDLTGLASNPDIKFSEPQLKCYMRQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFYDPQHNVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDDYWLKSRLSHSTVFRPPHHYRRCVADTFKDYPSTAVKLIETLLSVEPAHRGTAAAALESEFFMSEPLPCDPSSLPKYVPSKEIDAKLRDEAVRQGVVGGREQKVASGVRQEKGHRANVTAKDNADPGLAVQQGHCSSSRNQSELSNPHRGSVSGILVFPHKQSEKEMNDNFSGHLYKRPSHSGPLVPGSVWAKGRKEVDDVPPVSNRVNLSKLSGLVASRTFSEDQEVKPVHSNHRKPIEVRKSVESTNGSESRRRHDQKQIVDLNQIESRRVPAEKSTPGGRESMGNKIYLSGPLMVSSSNMDQMLKEHDRKIQEFSRRARIDKSRARGEKVFAQRK*

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