Glyma12g12780 - SoyBase

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Report for Sequence Feature Glyma12g12780

Feature Type:	gene_model
Chromosome:	Gm12
Start:	11074807
stop:	11077476
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g12780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G03600	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:1603820-1604308 REVERSE LENGTH=162	SoyBase	E_val: 4.00E-62	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_D7KCH9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F21B7.33 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KCH9_ARALL	SoyBase	E_val: 3.00E-54	ISS
UniRef100_I1LS28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LS28_SOYBN	SoyBase	E_val: 1.00E-121	ISS

Expression Patterns of Glyma12g12780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g12780 not represented in the dataset	Glyma12g12780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g12780

Paralog	Evidence	Comments
Glyma06g44740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g12780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g113500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g12780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g12780

Limit To All Plant Sequences

>Glyma12g12780.4   sequence type=transcript   gene model=Glyma12g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAAGCCGACATTTTAGTTACCAAGTTTTAATTAAGGGAAAAAGAATGAAACGTGGCAGCCAAGTGTGAAACTTATACTAAATTTTCTTACACAAATTATCATTCTCTCCTATTTTTGCGCAACCAAAGATACCATAATAATTCCAATAGTAGTATGGATGACATTAAAGAGTAAGACGTAAAGACCAAATTTTTTAAGGATTAATCCTAAGAGAAATCTGAAATCCGACCGCATAGAGTGAAACACACACACACACGGTCACTGCCCAGATTGGTCCACAGAACAAAGAACACAGACAGCAGCAAGGTCAAAAAAATTGTTTCGAATGGCAAAAGAAGAGGAACAACAACAACCCACTTCACCGATGCACCCACCTTACGCTTACACCATAATTCTGAACATCTTCAGCAAGAGAAGAACATGGGCGTGTCTATTTCTATTGGTCTACGGCACCCTTTTGACTTCTTCGTGGAACTTCCTCAAATCCACGCTTTCTTGGTACAATCTGCAGGTTGAGTCCTCCACCACCTCGGCGTGGCCTGCACTCTATGCTTCAGTGCTTCTGGGCACCGTGTTTGGGGTACTTTCCATGGTGGCGGCGCTGGTGGTTATGGTTCCCGCGCTGGTGGTGACGTGGATCACGATTGTGGTGCTTCTGGCCTTCTTTGGGAAGCCTAAGAGGACCCTTGTGGTGGAGGGGAGGAAGATTACGAGGGAGATTTTCGGGTTTGTGATGAGGACTCTGCTCAAGGAAGGGAATTTTGTGGCTGCGGTTTGTGCTGTTTTGGGGTACTTTGCTCTTGTTAGAAGGAATGGGACTCAAGGTGGGGTTGTTGTTGTTGGTGAATCGTGAGTGATTGGTGTTTGGTGGAGTGGTTGTTACATGAGTTGGTAAAGTGTCTTAATTTAATCTCTTTTTTTCGTGGGGCGCTTAGAGTAGAGGTTGATTACAATAGGTGAAAGAAGGAACTTTGCAAAATGTTACTTACTGAGATATGTGTAGATGCATAGCTGCTTGATGATGACAGGGGTTTATTTCACTGATATTGGGGTCAATGAAGTTGTTTTGAAAGTTACCAACCACCAGATTCTTTACTCCCAATTGTTGCAAACATCATGGAGAAACGCCTTCCATCTCATCACTTTATTTGTCCTCAATTTTCTTCTTTGCTCTACTAGCCCAAATACCCCTGAAACGGAGTAGCTAAATTACTTGGAAAATGGGGTCCAAATCTTATTTGGAAAGACATATAATATTTGAATTTGGAATTTGATGTCTTCTTGCACATGCCCAACCCAACCACACTTTTGTTGCAGATTATCTTTGATTGCTACTTCTTCTGCAAGCAAGCAAGACAGACCAGAAAAGATTCATTTGCTCCACATGGACTCCAAACTTTCTTTTCCCCTTTTCTTTTTCAATTTTGGTTAAAAAAATTGATAATCTTATCTAAGTATACCTTTCTACAGTTCTATCAGCACTGGATTCGTTGTATCATTGATTGTGATTTTTATTTTTATTTTAAA

>Glyma12g12780.5   sequence type=transcript   gene model=Glyma12g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAAGCCGACATTTTAGTTACCAAGTTTTAATTAAGGGAAAAAGAATGAAACGTGGCAGCCAAGTGTGAAACTTATACTAAATTTTCTTACACAAATTATCATTCTCTCCTATTTTTGCGCAACCAAAGATACCATAATAATTCCAATAGTAGTATGGATGACATTAAAGAGTAAGACGTAAAGACCAAATTTTTTAAGGATTAATCCTAAGAGAAATCTGAAATCCGACCGCATAGAGTGAAACACACACACACACGGTCACTGCCCAGATTGGTCCACAGAACAAAGAACACAGACAGCAGCAAGGTCAAAAAAATTGTTTCGAATGGCAAAAGAAGAGGAACAACAACAACCCACTTCACCGATGCACCCACCTTACGCTTACACCATAATTCTGAACATCTTCAGCAAGAGAAGAACATGGGCGTGTCTATTTCTATTGGTCTACGGCACCCTTTTGACTTCTTCGTGGAACTTCCTCAAATCCACGCTTTCTTGGTACAATCTGCAGGTTGAGTCCTCCACCACCTCGGCGTGGCCTGCACTCTATGCTTCAGTGCTTCTGGGCACCGTGTTTGGGGTACTTTCCATGGTGGCGGCGCTGGTGGTTATGGTTCCCGCGCTGGTGGTGACGTGGATCACGATTGTGGTGCTTCTGGCCTTCTTTGGGAAGCCTAAGAGGACCCTTGTGGTGGAGGGGAGGAAGATTACGAGGGAGATTTTCGGGTTTGTGATGAGGACTCTGCTCAAGGAAGGGAATTTTGTGGCTGCGGTTTGTGCTGTTTTGGGGTACTTTGCTCTTGTTAGAAGGAATGGGACTCAAGGTGGGGTTGTTGTTGTTGGTGAATCGTGAGTGATTGGTGTTTGGTGGAGTGGTTGTTACATGAGTTGGGTTTATTTCACTGATATTGGGGTCAATGAAGTTGTTTTGAAAGTTACCAACCACCAGATTCTTTACTCCCAATTGTTGCAAACATCATGGAGAAACGCCTTCCATCTCATCACTTTATTTGTCCTCAATTTTCTTCTTTGCTCTACTAGCCCAAATACCCCTGAAACGGAGTAGCTAAATTACTTGGAAAATGGGGTCCAAATCTTATTTGGAAAGACATATAATATTTGAATTTGGAATTTGATGTCTTCTTGCACATGCCCAACCCAACCACACTTTTGTTGCAGATTATCTTTGATTGCTACTTCTTCTGCAAGCAAGCAAGACAGACCAGAAAAGATTCATTTGCTCCACATGGACTCCAAACTTTCTTTTCCCCTTTTCTTTTTCAATTTTGGTTAAAAAAATTGATAATCTTATCTAAGTATACCTTTCTACAGTTCTATCAGCACTGGATTCGTTGTATCATTGATTGTGATTTTTATTTTTATTTTAAA

>Glyma12g12780.6   sequence type=transcript   gene model=Glyma12g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAAGCCGACATTTTAGTTACCAAGTTTTAATTAAGGGAAAAAGAATGAAACGTGGCAGCCAAGTGTGAAACTTATACTAAATTTTCTTACACAAATTATCATTCTCTCCTATTTTTGCGCAACCAAAGATACCATAATAATTCCAATAGTAGTATGGATGACATTAAAGAGTAAGACGTAAAGACCAAATTTTTTAAGGATTAATCCTAAGAGAAATCTGAAATCCGACCGCATAGAGTGAAACACACACACACACGGTCACTGCCCAGATTGGTCCACAGAACAAAGAACACAGACAGCAGCAAGGTCAAAAAAATTGTTTCGAATGGCAAAAGAAGAGGAACAACAACAACCCACTTCACCGATGCACCCACCTTACGCTTACACCATAATTCTGAACATCTTCAGCAAGAGAAGAACATGGGCGTGTCTATTTCTATTGGTCTACGGCACCCTTTTGACTTCTTCGTGGAACTTCCTCAAATCCACGCTTTCTTGGTACAATCTGCAGGTTGAGTCCTCCACCACCTCGGCGTGGCCTGCACTCTATGCTTCAGTGCTTCTGGGCACCGTGTTTGGGGTACTTTCCATGGTGGCGGCGCTGGTGGTTATGGTTCCCGCGCTGGTGGTGACGTGGATCACGATTGTGGTGCTTCTGGCCTTCTTTGGGAAGCCTAAGAGGACCCTTGTGGTGGAGGGGAGGAAGATTACGAGGGAGATTTTCGGGTTTGTGATGAGGACTCTGCTCAAGGAAGGGAATTTTGTGGCTGCGGTTTGTGCTGTTTTGGGGTACTTTGCTCTTGTTAGAAGGAATGGGACTCAAGGTGGGGTTGTTGTTGTTGGTGAATCGTGAGTGATTGGTGTTTGGTGGAGTGGTTGTTACATGAGTTGGTAAAGTGTCTTAATTTAATCTCTTTTTTTCGTGGGGCGCTTAGAGTAGAGGTTGATTACAATAGGTGAAAGAAGGAACTTTGCAAAATGTTACTTACTGAGATATGTGTAGATGCATAGCTGCTTGATGATGACAGGGTTTTACGCTTGAGAGATTGTGGACAGTACGATTGAGGATGATTGGGTCTTTGATCCTTGGACCCAGCATAAGTGGTTTTTAGAGGGCATACTCAATAAATAGGAGTGACCTCTTTTGGTCATGTCAGGTCACACATAGTAGAGCTCTGGTTTATTTCACTGATATTGGGGTCAATGAAGTTGTTTTGAAAGTTACCAACCACCAGATTCTTTACTCCCAATTGTTGCAAACATCATGGAGAAACGCCTTCCATCTCATCACTTTATTTGTCCTCAATTTTCTTCTTTGCTCTACTAGCCCAAATACCCCTGAAACGGAGTAGCTAAATTACTTGGAAAATGGGGTCCAAATCTTATTTGGAAAGACATATAATATTTGAATTTGGAATTTGATGTCTTCTTGCACATGCCCAACCCAACCACACTTTTGTTGCAGATTATCTTTGATTGCTACTTCTTCTGCAAGCAAGCAAGACAGACCAGAAAAGATTCATTTGCTCCACATGGACTCCAAACTTTCTTTTCCCCTTTTCTTTTTCAATTTTGGTTAAAAAAATTGATAATCTTATCTAAGTATACCTTTCTACAGTTCTATCAGCACTGGATTCGTTGTATCATTGATTGTGATTTTTATTTTTATTTTAAA

Coding sequences of Glyma12g12780

Limit To All Plant Sequences

>Glyma12g12780.1   sequence type=CDS   gene model=Glyma12g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAGAAGAGGAACAACAACAACCCACTTCACCGATGCACCCACCTTACGCTTACACCATAATTCTGAACATCTTCAGCAAGAGAAGAACATGGGCGTGTCTATTTCTATTGGTCTACGGCACCCTTTTGACTTCTTCGTGGAACTTCCTCAAATCCACGCTTTCTTGGTACAATCTGCAGGTTGAGTCCTCCACCACCTCGGCGTGGCCTGCACTCTATGCTTCAGTGCTTCTGGGCACCGTGTTTGGGGTACTTTCCATGGTGGCGGCGCTGGTGGTTATGGTTCCCGCGCTGGTGGTGACGTGGATCACGATTGTGGTGCTTCTGGCCTTCTTTGGGAAGCCTAAGAGGACCCTTGTGGTGGAGGGGAGGAAGATTACGAGGGAGATTTTCGGGTTTGTGATGAGGACTCTGCTCAAGGAAGGGAATTTTGTGGCTGCGGTTTGTGCTGTTTTGGGGTACTTTGCTCTTGTTAGAAGGAATGGGACTCAAGGTGGGGTTGTTGTTGTTGGTGAATCGTGA

>Glyma12g12780.4   sequence type=CDS   gene model=Glyma12g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAGAAGAGGAACAACAACAACCCACTTCACCGATGCACCCACCTTACGCTTACACCATAATTCTGAACATCTTCAGCAAGAGAAGAACATGGGCGTGTCTATTTCTATTGGTCTACGGCACCCTTTTGACTTCTTCGTGGAACTTCCTCAAATCCACGCTTTCTTGGTACAATCTGCAGGTTGAGTCCTCCACCACCTCGGCGTGGCCTGCACTCTATGCTTCAGTGCTTCTGGGCACCGTGTTTGGGGTACTTTCCATGGTGGCGGCGCTGGTGGTTATGGTTCCCGCGCTGGTGGTGACGTGGATCACGATTGTGGTGCTTCTGGCCTTCTTTGGGAAGCCTAAGAGGACCCTTGTGGTGGAGGGGAGGAAGATTACGAGGGAGATTTTCGGGTTTGTGATGAGGACTCTGCTCAAGGAAGGGAATTTTGTGGCTGCGGTTTGTGCTGTTTTGGGGTACTTTGCTCTTGTTAGAAGGAATGGGACTCAAGGTGGGGTTGTTGTTGTTGGTGAATCGTGA

>Glyma12g12780.5   sequence type=CDS   gene model=Glyma12g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAGAAGAGGAACAACAACAACCCACTTCACCGATGCACCCACCTTACGCTTACACCATAATTCTGAACATCTTCAGCAAGAGAAGAACATGGGCGTGTCTATTTCTATTGGTCTACGGCACCCTTTTGACTTCTTCGTGGAACTTCCTCAAATCCACGCTTTCTTGGTACAATCTGCAGGTTGAGTCCTCCACCACCTCGGCGTGGCCTGCACTCTATGCTTCAGTGCTTCTGGGCACCGTGTTTGGGGTACTTTCCATGGTGGCGGCGCTGGTGGTTATGGTTCCCGCGCTGGTGGTGACGTGGATCACGATTGTGGTGCTTCTGGCCTTCTTTGGGAAGCCTAAGAGGACCCTTGTGGTGGAGGGGAGGAAGATTACGAGGGAGATTTTCGGGTTTGTGATGAGGACTCTGCTCAAGGAAGGGAATTTTGTGGCTGCGGTTTGTGCTGTTTTGGGGTACTTTGCTCTTGTTAGAAGGAATGGGACTCAAGGTGGGGTTGTTGTTGTTGGTGAATCGTGA

>Glyma12g12780.6   sequence type=CDS   gene model=Glyma12g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAGAAGAGGAACAACAACAACCCACTTCACCGATGCACCCACCTTACGCTTACACCATAATTCTGAACATCTTCAGCAAGAGAAGAACATGGGCGTGTCTATTTCTATTGGTCTACGGCACCCTTTTGACTTCTTCGTGGAACTTCCTCAAATCCACGCTTTCTTGGTACAATCTGCAGGTTGAGTCCTCCACCACCTCGGCGTGGCCTGCACTCTATGCTTCAGTGCTTCTGGGCACCGTGTTTGGGGTACTTTCCATGGTGGCGGCGCTGGTGGTTATGGTTCCCGCGCTGGTGGTGACGTGGATCACGATTGTGGTGCTTCTGGCCTTCTTTGGGAAGCCTAAGAGGACCCTTGTGGTGGAGGGGAGGAAGATTACGAGGGAGATTTTCGGGTTTGTGATGAGGACTCTGCTCAAGGAAGGGAATTTTGTGGCTGCGGTTTGTGCTGTTTTGGGGTACTTTGCTCTTGTTAGAAGGAATGGGACTCAAGGTGGGGTTGTTGTTGTTGGTGAATCGTGA

Predicted protein sequences of Glyma12g12780

Limit To All Plant Sequences

>Glyma12g12780.1   sequence type=predicted peptide   gene model=Glyma12g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKEEEQQQPTSPMHPPYAYTIILNIFSKRRTWACLFLLVYGTLLTSSWNFLKSTLSWYNLQVESSTTSAWPALYASVLLGTVFGVLSMVAALVVMVPALVVTWITIVVLLAFFGKPKRTLVVEGRKITREIFGFVMRTLLKEGNFVAAVCAVLGYFALVRRNGTQGGVVVVGES*

>Glyma12g12780.4   sequence type=predicted peptide   gene model=Glyma12g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKEEEQQQPTSPMHPPYAYTIILNIFSKRRTWACLFLLVYGTLLTSSWNFLKSTLSWYNLQVESSTTSAWPALYASVLLGTVFGVLSMVAALVVMVPALVVTWITIVVLLAFFGKPKRTLVVEGRKITREIFGFVMRTLLKEGNFVAAVCAVLGYFALVRRNGTQGGVVVVGES*

>Glyma12g12780.5   sequence type=predicted peptide   gene model=Glyma12g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKEEEQQQPTSPMHPPYAYTIILNIFSKRRTWACLFLLVYGTLLTSSWNFLKSTLSWYNLQVESSTTSAWPALYASVLLGTVFGVLSMVAALVVMVPALVVTWITIVVLLAFFGKPKRTLVVEGRKITREIFGFVMRTLLKEGNFVAAVCAVLGYFALVRRNGTQGGVVVVGES*

>Glyma12g12780.6   sequence type=predicted peptide   gene model=Glyma12g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKEEEQQQPTSPMHPPYAYTIILNIFSKRRTWACLFLLVYGTLLTSSWNFLKSTLSWYNLQVESSTTSAWPALYASVLLGTVFGVLSMVAALVVMVPALVVTWITIVVLLAFFGKPKRTLVVEGRKITREIFGFVMRTLLKEGNFVAAVCAVLGYFALVRRNGTQGGVVVVGES*

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