Report for Sequence Feature Glyma12g12165
Feature Type: gene_model
Chromosome: Gm12
Start: 10214926
stop: 10216193
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g12165
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
UniRef100_UPI0002339B7D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339B7D related cluster n=1 Tax=unknown RepID=UPI0002339B7D
SoyBase E_val: 3.00E-26 ISS
Expression Patterns of Glyma12g12165
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g12165
Paralog Evidence Comments
Glyma06g45115 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g12165 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma12g12165
Coding sequences of Glyma12g12165
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g12165.1 sequence type=CDS gene model=Glyma12g12165 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGAAGCTCGAAGAAATAGACAATTCCGTGTCCAAAACCAAGAAGAAGAGGAATCAGGGATCCACCGGATTCTTTGTCTTCGTTGACTACCTTTACCTCTTGATTTTCCTGGGTTTCCTATGCTTCATCATCTTCAAGATTGTGGGCATTTGA
Predicted protein sequences of Glyma12g12165
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g12165.1 sequence type=predicted peptide gene model=Glyma12g12165 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAKLEEIDNSVSKTKKKRNQGSTGFFVFVDYLYLLIFLGFLCFIIFKIVGI*