Glyma12g11820 - SoyBase

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Report for Sequence Feature Glyma12g11820

Feature Type:	gene_model
Chromosome:	Gm12
Start:	9886812
stop:	9893943
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g11820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61250	AT	Annotation by Michelle Graham. TAIR10: secretory carrier 3 \| chr1:22586035-22588664 FORWARD LENGTH=289	SoyBase	E_val: 4.00E-159	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG3088	KOG	Secretory carrier membrane protein	JGI		ISS
PTHR10687	Panther	SECRETORY CARRIER MEMBRANE PROTEIN	JGI		ISS
PTHR10687:SF2	Panther	gb def: m01d7.2.p [caenorhabditis elegans]	JGI		ISS
PF04144	PFAM	SCAMP family	JGI		ISS
UniRef100_B9RW51	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Secretory carrier membrane protein, putative n=1 Tax=Ricinus communis RepID=B9RW51_RICCO	SoyBase	E_val: 9.00E-177	ISS
UniRef100_I1LRY3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRY3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g11820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g11820 not represented in the dataset	Glyma12g11820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g11820

Paralog	Evidence	Comments
Glyma06g45160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g11820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g108200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g11820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g11820

Limit To All Plant Sequences

>Glyma12g11820.2   sequence type=transcript   gene model=Glyma12g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAAAAAAGTGTGAAGTGAAGTGAAGGAGACGGTTATAAAAAGGACGCATGCAGATTTTGCGTTTGTGTGAAGTTTTTGTCAGAAAGAAACAGAATCGGGAAGAGAGGAAGCCGTAGATTCCAACGCCTTCTCTCTCAGTTACACACACATTGCAGCAACAATCACATCCATTTTTTCTCTATCACTCTGATTCCATGAGTCGCTACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTGCATTTTATACTACTAACACTGGAAGTGTTCCCTCTGCAAACTCAAGGCTCTCGCCCCTTCCTCCAGAGCCTTACGATCGTGGGGCAACTATTGACATCCCCCTTGATAATGCAAAGGACATAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGGAACTAAAACGAAGGGAAGATGCTATAGCACGAGCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGGTTTGGTTCTGTGTCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGGACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGTTGCACATTGCCTTTTGCATTTTAGCGGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACAGGCATTTTGGCTGCGATTGACGTGTTGGGCGACAATGCATTGGTTGGGATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTACAGTTTTAAAACGTGAGGCTGCCAGAGGCACAATGATGGCAGCTCTATGACATGGCACTTACATTTGTTTTCCCAATGGTTATATACCCGAAAAAAGATTTCTTGAGTTACCAGTTTTCCTTACACACTTTGCGCGTCACAAACCAGATAATTAAGATAGAAGCTTAGTTGTGCATATATAGAAATCATTGTATGAGATAGCCCCTTTACAAATGATTTATTTCAGCGTCTCTTTTATATTTTTGTTAACAATATACTCCATCTATTCGTGTGGGATTAAACGTTCTATTGGCTAGACTATCGGATGAAAGTAACCAAAAGAACAAACAAGTGAATCAATTAGGAGTGCTTAAGTTTCAACATGTTAGGTAAAAAGTTATCCAATTCAAATGTAAAAATAAATTGTGATTTAGGAATC

>Glyma12g11820.3   sequence type=transcript   gene model=Glyma12g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAAAAAAGTGTGAAGTGAAGTGAAGGAGACGGTTATAAAAAGGACGCATGCAGATTTTGCGTTTGTGTGAAGTTTTTGTCAGAAAGAAACAGAATCGGGAAGAGAGGAAGCCGTAGATTCCAACGCCTTCTCTCTCAGTTACACACACATTGCAGCAACAATCACATCCATTTTTTCTCTATCACTCTGATTCCATGAGTCGCTACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGAACACTGGAAGTGTTCCCTCTGCAAACTCAAGGCTCTCGCCCCTTCCTCCAGAGCCTTACGATCGTGGGGCAACTATTGACATCCCCCTTGATAATGCAAAGGACATAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGGAACTAAAACGAAGGGAAGATGCTATAGCACGAGCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGGTTTGGTTCTGTGTCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGGTCCAACCATCTGGTTTCTTGCAATTATCTATTTTATTTCTGGTGCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGGACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGTTGCACATTGCCTTTTGCATTTTAGCGGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACAGGCATTTTGGCTGCGATTGACGTGTTGGGCGACAATGCATTGGTTGGGATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTACAGTTTTAAAACGTGAGGCTGCCAGAGGCACAATGATGGCAGCTCTATGACATGGCACTTACATTTGTTTTCCCAATGGTTATATACCCGAAAAAAGATTTCTTGAGTTACCAGTTTTCCTTACACACTTTGCGCGTCACAAACCAGATAATTAAGATAGAAGCTTAGTTGTGCATATATAGAAATCATTGTATGAGATAGCCCCTTTACAAATGATTTATTTCAGCGTCTCTTTTATATTTTTGTTAACAATATACTCCATCTATTCGTGTGGGATTAAACGTTCTATTGGCTAGACTATCGGATGAAAGTAACCAAAAGAACAAACAAGTGAATCAATTAGGAGTGCTTAAGTTTCAACATGTTAGGTAAAAAGTTATCCAATTCAAATGTAAAAATAAATTGTGATTTAGGAATC

>Glyma12g11820.4   sequence type=transcript   gene model=Glyma12g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTGAAGTTTTTGTCAGAAAGAAACAGAATCGGGAAGAGAGGAAGCCGTAGATTCCAACGCCTTCTCTCTCAGTTACACACACATTGCAGCAACAATCACATCCATTTTTTCTCTATCACTCTGATTCCATGAGTCGCTACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTGCATTTTATACTACTAACACTGGAAGTGTTCCCTCTGCAAACTCAAGGCTCTCGCCCCTTCCTCCAGAGCCTTACGATCGTGGGGCAACTATTGACATCCCCCTTGATAATGCAAAGGACATAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGGTGATTCATTTTGATATCTCATTTGATATCTTTAGAACCAAGTATACAACTTACTTTTATATGAGTTAGAGACTTGGTTTGTCAGATTCAATATTTTATATTGCTATCTTATATATGTGCAAATAAATTAAAATGAATCTAGAGATTCTAAGTTAATCAGGGACCTAATTGGTAGCAAGAGTGGGTTATGTCAATTATGTGATATGTGGCCACTTTTTCTTATATTTAATATATTAGTATTACTGTATTAGTATATTAGTACTTAGTATGCGGGTAAACTTTCTGTCGGGAATCTTGTTCAGTACATTAATTAAAATTGTGATTTCTGATTTTTATTGCTACATTTGTTTAGTTTAACCTTACTATGAATTA

Coding sequences of Glyma12g11820

Limit To All Plant Sequences

>Glyma12g11820.1   sequence type=CDS   gene model=Glyma12g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGCTACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTGCATTTTATACTACTAACACTGGAAGTGTTCCCTCTGCAAACTCAAGGCTCTCGCCCCTTCCTCCAGAGCCTTACGATCGTGGGGCAACTATTGACATCCCCCTTGATAATGCAAAGGACATAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGGAACTAAAACGAAGGGAAGATGCTATAGCACGAGCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGGTTTGGTTCTGTGTCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGGTCCAACCATCTGGTTTCTTGCAATTATCTATTTTATTTCTGGTGCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGGACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGTTGCACATTGCCTTTTGCATTTTAGCGGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACAGGCATTTTGGCTGCGATTGACGTGTTGGGCGACAATGCATTGGTTGGGATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTACAGTTTTAAAACGTGAGGCTGCCAGAGGCACAATGATGGCAGCTCTATGA

>Glyma12g11820.2   sequence type=CDS   gene model=Glyma12g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGCTACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTGCATTTTATACTACTAACACTGGAAGTGTTCCCTCTGCAAACTCAAGGCTCTCGCCCCTTCCTCCAGAGCCTTACGATCGTGGGGCAACTATTGACATCCCCCTTGATAATGCAAAGGACATAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGGAACTAAAACGAAGGGAAGATGCTATAGCACGAGCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGGTTTGGTTCTGTGTCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGGACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGTTGCACATTGCCTTTTGCATTTTAGCGGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACAGGCATTTTGGCTGCGATTGACGTGTTGGGCGACAATGCATTGGTTGGGATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTACAGTTTTAAAACGTGAGGCTGCCAGAGGCACAATGATGGCAGCTCTATGA

>Glyma12g11820.3   sequence type=CDS   gene model=Glyma12g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGCTACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGAACACTGGAAGTGTTCCCTCTGCAAACTCAAGGCTCTCGCCCCTTCCTCCAGAGCCTTACGATCGTGGGGCAACTATTGACATCCCCCTTGATAATGCAAAGGACATAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGGAACTAAAACGAAGGGAAGATGCTATAGCACGAGCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGGTTTGGTTCTGTGTCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGGTCCAACCATCTGGTTTCTTGCAATTATCTATTTTATTTCTGGTGCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGGACTGACAGTGCTCTGAAATTTGGCTGGTTCTTCTTGCTTTACATGTTGCACATTGCCTTTTGCATTTTAGCGGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACAGGCATTTTGGCTGCGATTGACGTGTTGGGCGACAATGCATTGGTTGGGATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTACAGTTTTAAAACGTGAGGCTGCCAGAGGCACAATGATGGCAGCTCTATGA

>Glyma12g11820.4   sequence type=CDS   gene model=Glyma12g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGCTACGATCCCAATCCCTTCGACGAAGAACCAATCGAGGTTAATCCATTCGCGGATGGAACAGCTAAAGGAAAAGGGTCAGGGCAATCAAGTTATAGTGGAGGTGCATTTTATACTACTAACACTGGAAGTGTTCCCTCTGCAAACTCAAGGCTCTCGCCCCTTCCTCCAGAGCCTTACGATCGTGGGGCAACTATTGACATCCCCCTTGATAATGCAAAGGACATAAAAGCAAAGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGGTGATTCATTTTGATATCTCATTTGATATCTTTAGAACCAAGTATACAACTTACTTTTATATGAGTTAG

Predicted protein sequences of Glyma12g11820

Limit To All Plant Sequences

>Glyma12g11820.1   sequence type=predicted peptide   gene model=Glyma12g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRYDPNPFDEEPIEVNPFADGTAKGKGSGQSSYSGGAFYTTNTGSVPSANSRLSPLPPEPYDRGATIDIPLDNAKDIKAKEKELQAKEAELKRREQELKRREDAIARAGIVIEEKNWPPFFPIIHHDIAKEIPIHLQRIQYIAFTTWLGLVLCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGAPGSYVLWYRPLYRAMRTDSALKFGWFFLLYMLHIAFCILAAVAPPIIFKGKSLTGILAAIDVLGDNALVGIFYFIGFGFFCLESVLSIWVIQQVYMYFRGSGKATVLKREAARGTMMAAL*

>Glyma12g11820.2   sequence type=predicted peptide   gene model=Glyma12g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRYDPNPFDEEPIEVNPFADGTAKGKGSGQSSYSGGAFYTTNTGSVPSANSRLSPLPPEPYDRGATIDIPLDNAKDIKAKEKELQAKEAELKRREQELKRREDAIARAGIVIEEKNWPPFFPIIHHDIAKEIPIHLQRIQYIAFTTWLGLVLCLLWNIVAVTTAWIKGEGSYVLWYRPLYRAMRTDSALKFGWFFLLYMLHIAFCILAAVAPPIIFKGKSLTGILAAIDVLGDNALVGIFYFIGFGFFCLESVLSIWVIQQVYMYFRGSGKATVLKREAARGTMMAAL*

>Glyma12g11820.3   sequence type=predicted peptide   gene model=Glyma12g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRYDPNPFDEEPIEVNPFALKEKGQGNQVIVENTGSVPSANSRLSPLPPEPYDRGATIDIPLDNAKDIKAKEKELQAKEAELKRREQELKRREDAIARAGIVIEEKNWPPFFPIIHHDIAKEIPIHLQRIQYIAFTTWLGLVLCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGAPGSYVLWYRPLYRAMRTDSALKFGWFFLLYMLHIAFCILAAVAPPIIFKGKSLTGILAAIDVLGDNALVGIFYFIGFGFFCLESVLSIWVIQQVYMYFRGSGKATVLKREAARGTMMAAL*

>Glyma12g11820.4   sequence type=predicted peptide   gene model=Glyma12g11820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRYDPNPFDEEPIEVNPFADGTAKGKGSGQSSYSGGAFYTTNTGSVPSANSRLSPLPPEPYDRGATIDIPLDNAKDIKAKEKELQAKEAELKRREQVIHFDISFDIFRTKYTTYFYMS*

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