Report for Sequence Feature Glyma12g11780
Feature Type: gene_model
Chromosome: Gm12
Start: 9821006
stop: 9825946
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g11780
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G03520 AT
Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:877948-879553 REVERSE LENGTH=447
SoyBase E_val: 0 ISS
GO:0016051 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0008375 GO-mf
Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
KOG0799
KOG
Branching enzyme
JGI ISS
PTHR19297 Panther
GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
JGI ISS
PTHR19297:SF2 Panther
GALACTOSYLTRANSFERASE-RELATED
JGI ISS
PF02485 PFAM
Core-2/I-Branching enzyme
JGI ISS
UniRef100_G7ZX28 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase n=1 Tax=Medicago truncatula RepID=G7ZX28_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LRY0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRY0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g11780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g11780
Paralog Evidence Comments
Glyma06g45200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g11780 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g107700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g11780
Coding sequences of Glyma12g11780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g11780.1 sequence type=CDS gene model=Glyma12g11780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGAAAAATGTCGGTTCTCATTCAGGAAGGATGTTTAGTGATAAGAAGTGGATTCTCCCCTTTTTTGCAAGTTTGATTATATCTATGAGTCTAGTTCTGACAGCCATTCTTGGATTACTTAGTTCTGATGGCGGGGGAGAGCAGTCACCATTTGAAATCATTTCCTTCAAGAGATCAGAGGATTCAAGTGGATATTTTGTGGAATCAGATATAGAGAAGTCCTTAAATGTTAGTGTGGTGAAAAGGGAGGCACCAAGGTTTGCATATCTTATTTCAGGCACCAAGGGTGATAGTCATAGGATGATGAGGACATTAGAGGCAGTGTACCACCCGAGGAATCAATATATCTTGCACTTAGATCTTGAGGCGCCACCCCGGGAAAGGTTGGAATTGGCAAATGCAGTGAAAGCTGATCCAATATTTCGTGGGGTGGAGAATGTGCGTGTTATGTCTCAATCCAATTTGGTAACTTATAAGGGTCCTACGATGATTGCTTGTACCCTCCAAGCTATTGCAATATTGTTGAAGGAAAGTTCAGAGTGGGACTGGTTTATTAACCTCAGTGCCTCAGATTATCCCCTTATGACACAGGATGATTTGCTTCATGTTTTCTCAAATCTGTCAAGAAATCTCAATTTCATTGAACATACACGCATTGCTGGTTGGAAACTGAACCAAAGAGCAAGACCCATCATTATTGACCCTGCTCTTTACTTATCAAAGAAATCTGATTTAGCATTGACTACTCAAAGAAGAACACTTCCAACATCTTTTAAACTGTTTACTGGTTCAGCTTGGGTTGTACTGACTCGGTCCTTTGTGGAGTACTGCATATGGGGATGGGATAATTTTCCACGGACTATGCTAATGTATTATACAAATTTTATCTCCTCGCCAGAGGGATATTTTCACACTGTCATTTGTAACACTGAGGAATTCCATCACACGGCGATAAACCACGATCTTCACTACATTGCTTGGGACACTCCTCCAAAGCAGCATCCCATCTCTTTAACTGTGAAGGACTTTGACAAAATGGTTAAAAGCAAGGCACTCTTTGCGCGCAAATTTGCAAAGGAGGATCCAGTGTTAGACAAGATTGACAAAGAACTTCTGGGGCGCACACATAGATTTTCACCTGGTGCATGGTGTGTTGGGAACACAGATGGTGGGGCTGACCCTTGTTCTGTTCGTGGCAATGATACAATGTTTAGGCCAGGACCTGGTGCTGAGAGGCTACGTGAGCTGCTTCAGGTGCTGTTATCTAAAGAATCTCTAAGCAAGCAGTGTTTGTGA
Predicted protein sequences of Glyma12g11780
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g11780.1 sequence type=predicted peptide gene model=Glyma12g11780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRKNVGSHSGRMFSDKKWILPFFASLIISMSLVLTAILGLLSSDGGGEQSPFEIISFKRSEDSSGYFVESDIEKSLNVSVVKREAPRFAYLISGTKGDSHRMMRTLEAVYHPRNQYILHLDLEAPPRERLELANAVKADPIFRGVENVRVMSQSNLVTYKGPTMIACTLQAIAILLKESSEWDWFINLSASDYPLMTQDDLLHVFSNLSRNLNFIEHTRIAGWKLNQRARPIIIDPALYLSKKSDLALTTQRRTLPTSFKLFTGSAWVVLTRSFVEYCIWGWDNFPRTMLMYYTNFISSPEGYFHTVICNTEEFHHTAINHDLHYIAWDTPPKQHPISLTVKDFDKMVKSKALFARKFAKEDPVLDKIDKELLGRTHRFSPGAWCVGNTDGGADPCSVRGNDTMFRPGPGAERLRELLQVLLSKESLSKQCL*