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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma12g11610

Feature Type:gene_model
Chromosome:Gm12
Start:9700103
stop:9701686
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g11610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G20900AT Annotation by Michelle Graham. TAIR10: diacylglycerol kinase 5 | chr2:8989794-8992798 REVERSE LENGTH=491 SoyBaseE_val: 1.00E-104ISS
GO:0007205GO-bp Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0004143GO-mf Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity SoyBaseN/AISS
PTHR11255Panther DIACYLGLYCEROL KINASE JGI ISS
PTHR11255:SF1Panther MYOSIN HEAVY CHAIN KINASDE JGI ISS
PF00609PFAM Diacylglycerol kinase accessory domain JGI ISS
UniRef100_I1LRW7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LRW7_SOYBN SoyBaseE_val: 3.00E-137ISS
UniRef100_Q9SKS9UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT2G20900 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SKS9_ARATH SoyBaseE_val: 6.00E-102ISS

Expression Patterns of Glyma12g11610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g11610 not represented in the dataset
Glyma12g11610 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g11610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g106500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g11610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g11610
>Glyma12g11610.2   sequence type=CDS   gene model=Glyma12g11610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGACATGGTGAATGGCAAGACCTAGAAATACCTCCCAGCATTCAGTCAATTGTATGTCTCAACTTGCCCAGCTTTTCTGGTGGATTCAATCCATGGGGTACACCAAATAGGAGGAAGCAGAGTGACAGAGATTTGACACCACTATTTGTAGATGATGGCCTTCTAGAAGTTGTTGGTTTTAGAAATGCATGGCATGGACTTGTTTTGCTTGCTCCAAAAGGACATGGAACTCGTCTTGCTCAGGCACACAGAATCCGGTTTGAGTTTCGCAAAGGTGCAGCAGATCATACATTCATGAGGATTGATGGGGAACCTTGGAAGCAACCTCTTCCAATTGATGATGATACTGTTGTTGTTGAGATTTCTCACCTTGGCCAGGTCAACATGCTATCCACTCATAATTGCAAGTCTAAAAGTGTGTATGATCCTTCATCACCACACCATGAGGATGAGGAAGATGACACTGATGAAGAAGACTCTGTAGCAGAGGAATTTCGGAAGTTCGGTGCAGCCGATACATTTAGAATCCCAGATGAGGTTGATGCTTCTCAGCATAGTTAG
Predicted protein sequences of Glyma12g11610
>Glyma12g11610.2   sequence type=predicted peptide   gene model=Glyma12g11610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRHGEWQDLEIPPSIQSIVCLNLPSFSGGFNPWGTPNRRKQSDRDLTPLFVDDGLLEVVGFRNAWHGLVLLAPKGHGTRLAQAHRIRFEFRKGAADHTFMRIDGEPWKQPLPIDDDTVVVEISHLGQVNMLSTHNCKSKSVYDPSSPHHEDEEDDTDEEDSVAEEFRKFGAADTFRIPDEVDASQHS*






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