Glyma12g11573 - SoyBase

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Report for Sequence Feature Glyma12g11573

Feature Type:	gene_model
Chromosome:	Gm12
Start:	9664685
stop:	9666867
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g11573

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07810	AT	Annotation by Michelle Graham. TAIR10: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein \| chr5:2491412-2498484 REVERSE LENGTH=1190	SoyBase	E_val: 7.00E-50	ISS
GO:0006310	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA recombination	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0032204	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance	SoyBase	N/A	ISS
GO:0043247	GO-bp	Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0004519	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endonuclease activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
PTHR10799	Panther	ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED	JGI		ISS
PTHR10799:SF43	Panther	HELICASE	JGI		ISS
PF00176	PFAM	SNF2 family N-terminal domain	JGI		ISS
UniRef100_B9RLT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RLT0_RICCO	SoyBase	E_val: 8.00E-51	ISS
UniRef100_UPI0002338D4F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338D4F related cluster n=1 Tax=unknown RepID=UPI0002338D4F	SoyBase	E_val: 7.00E-90	ISS

Expression Patterns of Glyma12g11573

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g11573 not represented in the dataset	Glyma12g11573 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g11573 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma12g11573

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g11573

Limit To All Plant Sequences

>Glyma12g11573.1   sequence type=CDS   gene model=Glyma12g11573   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTTACATCAGAGCATGACATGTCACAAGATGAAAATCTTGGTGATGCTACCGAACTACCTCAAGTTCAACTCAGGAGGTCCAACAGGGAGAGACAACCTTCTAAGAGGCTCGAAATATGCTCCCCCGATTCCTTCTTCATAATACCCATCCCTCTCTCTTCCTTCCCTTTCCCTGGTCACCAACATTGCCTCAACACTCTAAGCTCCATTCTCTCACAACAACACATACTTTACATTACTCACTCTCACTCTTATGATGGTGAGAAGGTGTGCATGTTCAAGTTGGCAGAGTACCGCGCCGTGCTGAAGCAGCTAAAGGCCGCGACGGTGACGGAGGTGCTGCTGATGGAGGAGATCCCCTGGGCGACATTCAACGTCGTGGAGTGCCTCTCGTGTTTGTTTGCGACTGGGTGGTGGGCGCCCGTGCGGTCGGAGCACCTGCCTGACGACGAGGTGGATCGCCTGATCAGGAAGCTTCCGAGGACGCTCTTGGAAAGGTTACTACCTTTCCAGCATGATGGGTTGAGGTTCGCGTTGAGAAGAGGTGCAAGGTGCCTCATTGCCGATGATATGGGCCTCGGGAAGATGCTACAGTCTATTTCTATTGCAGGGTGTTTTGTGGAGGAAGGGTCTATACTTGTGGCTTTGTGGAGGAAG

Predicted protein sequences of Glyma12g11573

Limit To All Plant Sequences

>Glyma12g11573.1   sequence type=predicted peptide   gene model=Glyma12g11573   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELTSEHDMSQDENLGDATELPQVQLRRSNRERQPSKRLEICSPDSFFIIPIPLSSFPFPGHQHCLNTLSSILSQQHILYITHSHSYDGEKVCMFKLAEYRAVLKQLKAATVTEVLLMEEIPWATFNVVECLSCLFATGWWAPVRSEHLPDDEVDRLIRKLPRTLLERLLPFQHDGLRFALRRGARCLIADDMGLGKMLQSISIAGCFVEEGSILVALWRK

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