SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G05120 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr4:2632886-2634824 REVERSE LENGTH=418 | SoyBase | E_val: 0 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0015858 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleoside transport | SoyBase | N/A | ISS |
| GO:0015864 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleoside transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005337 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1479 | KOG | Nucleoside transporter | JGI | ISS | |
| PTHR10332 | Panther | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER ENT (SLC29) | JGI | ISS | |
| PTHR10332:SF3 | Panther | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 4-RELATED | JGI | ISS | |
| PF01733 | PFAM | Nucleoside transporter | JGI | ISS | |
| UniRef100_G7IRM9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Equilibrative nucleoside transporter n=1 Tax=Medicago truncatula RepID=G7IRM9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CA4E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CA4E related cluster n=1 Tax=unknown RepID=UPI000233CA4E | SoyBase | E_val: 0 | ISS |
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Glyma12g11540 not represented in the dataset |
Glyma12g11540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g45490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g105700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g11540.1 sequence type=CDS gene model=Glyma12g11540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATCACCTTGACCAAGGTTTTGTTTTCCACCATGTTGCAGAGATTGATACAAGAGAAGAATCTAAGGCAGCTATGGAGAACAATGAGCCTCCAAGGCGTCTTGAGGGAAAACATGCTGCAATGGCAGTTTGCTGGCTTCTTGGCACTGGGTGCCTTTTCGCGTGGAACAGTATGCTGACTATAGAAGATTACTATGTTTACTTGTTTCCGAAATACCACCCGTCTAGGGTGCTTACTCTTGTATATCAGCCATTTGCAGTTGGAACACTAGCAATACTGGCTTACAAAGAGGACAGAATCAATACAAGGATAAGAAACTTATTTGGATATACTCTTTTCTTCATAAGCACTTTGTCGATCTTAATTTTGGATTTAGCAACATCTGGTAAAGGAGGCCTTGGAACTTTTATTGGTATATGCGTAATTAGTGGTGCATTTGGAATAGCAGATGCTCATACGCAAGGTGGAATGGTGGGAGACCTGTCCTACATGCTTCCAGAATTCATTCAGTCTTTCCTTGCTGGCTTGGCAGCATCAGGTGCACTAACATCTGCTTTGAGGTTGATTACAAAAGCAGCCTTTGAAAATTCTAAGAATGGTCTTCGCAAAGGAGCCATTATGTTCTTTGCCATATCAACATTCTTTGAGCTTCTTTGTGTTCTTCTCTATGCGTTTGTATTCCCTAAATTACCAATTGTGAAGTACTACCGTTCAAAAGCAGCATCTGAAGGATCCAAAACAGTATCAGCTGACCTTGCTGCAGGTGGCATCCAGATCCCATCTGGAAGAGCCAATCAATATGAAAAAGAAATAGATCGCAAAGGAAATAAGAAACTGTTATTGGAAAACATTGATTATGCACTTGATTTGTTCCTAATATATGCGCTTACACTTTCAATTTTCCCTGGATTCTTATCAGAAGATACTGGATCACACAGTTTAGGCACCTGGTATGCACTTGTTTTAATAGCTATGTACAATGTGTGTGATCTGATTGGAAGATACATTCCACTCTTGAAATTTCTAAAGTTGGAATCTCGAAAAAAGCTGACCACAGCAATTGTTAGTCGCTTGTTATTTGTGCCGGCGTTTTATTTTACTGCGAAGTATGGCACACAGGGCTGGATGATAATGTTGACATCTTTTTTGGGGTTATCCAATGGCTACTTCACTGTTTGTGTTCTCACTTCAGCACCCAAAGGTTACAAGGGACCGGAACAAAATGCCTTGGGAAATTTGTTGGTGTTGTTTCTTCTTGGAGGTATCTTTGCAGGGGTAACACTTGATTGGTTTTGGTTAATAGGTAAAGGGTGGTGA
>Glyma12g11540.1 sequence type=predicted peptide gene model=Glyma12g11540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYHLDQGFVFHHVAEIDTREESKAAMENNEPPRRLEGKHAAMAVCWLLGTGCLFAWNSMLTIEDYYVYLFPKYHPSRVLTLVYQPFAVGTLAILAYKEDRINTRIRNLFGYTLFFISTLSILILDLATSGKGGLGTFIGICVISGAFGIADAHTQGGMVGDLSYMLPEFIQSFLAGLAASGALTSALRLITKAAFENSKNGLRKGAIMFFAISTFFELLCVLLYAFVFPKLPIVKYYRSKAASEGSKTVSADLAAGGIQIPSGRANQYEKEIDRKGNKKLLLENIDYALDLFLIYALTLSIFPGFLSEDTGSHSLGTWYALVLIAMYNVCDLIGRYIPLLKFLKLESRKKLTTAIVSRLLFVPAFYFTAKYGTQGWMIMLTSFLGLSNGYFTVCVLTSAPKGYKGPEQNALGNLLVLFLLGGIFAGVTLDWFWLIGKGW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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