SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G03270 | AT | Annotation by Michelle Graham. TAIR10: Cyclin D6;1 | chr4:1432375-1433691 REVERSE LENGTH=302 | SoyBase | E_val: 4.00E-73 | ISS |
| GO:0000278 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0010440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004693 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0656 | KOG | G1/S-specific cyclin D | JGI | ISS | |
| PTHR10177 | Panther | CYCLINS | JGI | ISS | |
| PTHR10177:SF76 | Panther | CYCLIN-D | JGI | ISS | |
| PF00134 | PFAM | Cyclin, N-terminal domain | JGI | ISS | |
| PF02984 | PFAM | Cyclin, C-terminal domain | JGI | ISS | |
| UniRef100_G7IRM6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-D5-2 n=1 Tax=Medicago truncatula RepID=G7IRM6_MEDTR | SoyBase | E_val: 3.00E-134 | ISS |
| UniRef100_UPI000233CA4C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CA4C related cluster n=1 Tax=unknown RepID=UPI000233CA4C | SoyBase | E_val: 0 | ISS |
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Glyma12g11510 not represented in the dataset |
Glyma12g11510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g45510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g105600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g11510.2 sequence type=CDS gene model=Glyma12g11510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTTGACCTTGAAAACCCTTTAGAAAATCTTCACTCTGATGATGTCTCTTACCTCTTCCTCATTGAATCTGACCACACCCCATCACAGAATCACTCTCAGACTCTCAAAGCTAGAGATCTTGACATCTCTGTCAGAAGAGAACTCATTTCCTTAATCTCACAGTTGTCCTGTGCTTTGGATCCGGTTTTGTCTTACCTTGCTATCAACTATCTGGACCGGTTCCTGACCAACCAAGGGATTCTGCAACCAAAGCCATGGGCCCTGAGGCTCGTTGCTGTCTCTTGCATTTCTCTAACTGTCAAGATGATGGGAACTGAATACCCTGCCACTGATATCCAGGCCCTTTTGAATCAAAGTGATGGTGGCATCATCTTTGAGACACAAACAATACAAAGAATGGAAGCACTCATCTTGGGAGCATTACAATGGAGAATGAGATCGATCACCCCATTCTCTTTCGTAGCTTTCTTTATTGCCTTGATGGGGCTCAAAGAGTCGCCAATGGGGCAGGTTCTGAAAAACCGTGCCTCTGAAATCATATTCAAGTCACAAAGAGAGATAAGGCTTTGGGGATTCAAGCCATCTATAATTGCTGCATCTGCTCTTCTTTGTGCTTCTCATGAGTTGTTTCCTTTTCAATATCCGTTCTTCTTAAAAGCAATATCCGATTCTTCATATGTAAATAAAGAAATCGTGGAGCAGTGCTACAAAGTGATACAAGACATAGCCATAGAGGAAGAGTACTCTTCTGCGTTGAATGGGGTTTCAAGGTCAGACACACCGATTAATGTGTTGGACCATCATTTTCTGAGTTCAGAAAGTGAAAAAACCAACGGAATCACCGTTGCTAATGCTACTGATTCTCCTCTTGGGGATCTCAAAAGAAGGAAAATCACTGGCTGTGGTGGAAACAATCCAACAATCCTCAATTCTTGGATTCAACCATGCGAGAGAGAGTGTGAAAAGTAA
>Glyma12g11510.2 sequence type=predicted peptide gene model=Glyma12g11510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFDLENPLENLHSDDVSYLFLIESDHTPSQNHSQTLKARDLDISVRRELISLISQLSCALDPVLSYLAINYLDRFLTNQGILQPKPWALRLVAVSCISLTVKMMGTEYPATDIQALLNQSDGGIIFETQTIQRMEALILGALQWRMRSITPFSFVAFFIALMGLKESPMGQVLKNRASEIIFKSQREIRLWGFKPSIIAASALLCASHELFPFQYPFFLKAISDSSYVNKEIVEQCYKVIQDIAIEEEYSSALNGVSRSDTPINVLDHHFLSSESEKTNGITVANATDSPLGDLKRRKITGCGGNNPTILNSWIQPCERECEK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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