SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G03260 | AT | Annotation by Michelle Graham. TAIR10: Outer arm dynein light chain 1 protein | chr4:1429092-1431431 FORWARD LENGTH=677 | SoyBase | E_val: 2.00E-177 | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| KOG0531 | KOG | Protein phosphatase 1, regulatory subunit, and related proteins | JGI | ISS | |
| PTHR10588 | Panther | PROTEIN PHOSPHATASES PP1 REGULATORY SUBUNIT | JGI | ISS | |
| PTHR10588:SF49 | Panther | LEUCINE RICH REPEAT FAMILY PROTEIN | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| UniRef100_B9S9P8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 1 regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9S9P8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LRV4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LRV4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g11240 not represented in the dataset |
Glyma12g11240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g45610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g103900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g11240.3 sequence type=transcript gene model=Glyma12g11240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGAACGCTGTTTATTCAGAAGCTATTATTATTATTATTATTATATATAGAAAAAAATGAATGGAAGGTGCTTCTTTGGTGCCTTGGTGGCGTAGCCTAGCAGGACAGGGAAACGGAAGAAGAAGAAGAAGCTCTTTCTCTATACAACAGTGCTCCTTCTTTCATTCCTTCAAAGAGGACTGCATCTCTTATGCGTATCTGTCTCTGGATTCTGCTGGTTGCAAAGGAATTTCTTTCACTCTGGCCGCTATAACAAAGTCAAACTATTCTCGCACCTCTAGGAGGGTGTGGGGTGACGAAGAGGGAGTGATTTGGCTTTGTGTTTTGCGTAGATCAAAGTCATCAGATATATGGAGATTGTGCCGTGTTTCAGTGGGCTTGTCGCTTGATTATGGCTAAGGGTGGCTTTTTCCTGTGTTGCCAGAAGCTCTTTCTAGTTTGCCACTGAATCTGAGCAAATTTGGTGTCTTTGGTTAGGCTTCTGGAAAATTGATGCACAGTATAGATTGTAATTGATATTTGTTTTTCTGTCTTAAAGAAAGTTGTGTTTAGATGTAGCTGTCTACGTCATTGCATTGCAGCAATGTTTAGGTTTTCTTGTTTCCATGCTAATGTCCAAGGCAACAAGGCAAAGAAAACAGTTCAACCCTCTTCTGAAGCAATGGTGAAGGGTTTGCAAGATGTTACGGAAAATCATGGCTGTAAAGATTCATCTAATCTTCCATGTGCATATTCATCCCCTTCGAAAGAACAAGCACACAAGCAAATAAATGTCATGGAGAATCATAGCAATTGGGATTCTGTTGGGCGCAGTTGTAGGTCAGAGGATCTGAATAGCAAGTTTTCCTTTGAAAACGACAACAATGTTCACCAAACTAGGCATATTAAGAAGAGCCAGTCTCTTCAAAGTGGGCTTGATCAAGGCATCAGGGAAGCTGATGAAGATCTTGGGTTGTCGTGTGATGGTGCCAAAAGCCAGAATGAGTCAACAATTTCTATTAGCAGAAGGTATCATGATGCAAACCCCATTGATCAGTATGGAAATAATCCAAACGTTGAGTTTCAAGTCAGTTCAGGTCTTGCGAATGATGGCTCACTTTTTTCAATAGGAGACCCAATGCCTTCAGATAAAGATGCCCATGAAATTTCTGATACTCCGTTATCTGTTGAATTTGCTGGTGACATTCCTGACCAGACTTTTGTTCCTGGTAGCCTATTTCTAAGGAAGTCACGTTCTTTACCCAATATCAGAGCTTCTATACTTTCTTCTGAAAGAGATGCTTTTAAACATGCATTGTCAAGATCTTCCGATGATCTTCACGCTTTACGCATGTGGCAGAAAGAGGAATTCATCAATGAGTTTGATGATCAAATAAGGGCAGATCAAGAAAGAGAGAATGACATGGGAAAACCTGAAGATGGTCGTATGGACAGTTTCTTTGATGATGGTTTTGATTCTTATCTGCTTTCTGGTTCAGCAAAAGACTGGGTAATGCCAATTACAGATGATACAAGTAATGTCAAAACCCTTCAAGGAGATTCTTTAGTTGACTGTGCGGGTGAATTTCCTAAGAAGGATTTTAAGATTAAGCGCATTGAGGATTGGGTAATTGGTTTGCAGCATTGTGGGCCACCTCTAGAGGAAACAAATGAAGATTTGCCTGAAGTTATTGAACCTTTAATTGATGTTAACACAGTAAATGGCGTGACTGCTGCCAGTGTGAATCATAAGGTCACTCCAGGAATGGAAGCAGCTAAAAGATATATATCTTCTCTGAGTGCTAATGCCACTGCTGCTCAGCTGGGAAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTAAAAGTGCTCAATTTGGCTGGAAATGCTATCGTGAGGATAACTGCTGGTGCTCTTCCTCGCGGACTTCACGCATTGAATTTGTCGAGAAACAAGATCTCCACTATAGAAGGATTACGTGAACTTACTCGGCTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGTCTTGCATCCTGCTCATCTTTGAAGGAGCTGTACCTGGCTGGAAACAAGATCAGTGAAGTAGAGGGTCTGCACCGCCTCTTGAAACTAAGTATTCTGGATCTCCGTTTTAACAAAATTTCAACAGCCAAATGTCTAGGCCAACTTGCAGCCAACTATAATACTTTGCAAGCTATCAACTTGGATGGGAACCCGGCCCAGAAAAATGTTGGAGATGAACAGATGAAGAAATATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAATCGGCAGCCTATGAAAGTGAACTCTTTGAAGGATGGAGCAGAACGTTCGGTTCGGTTAGGAATGAATTCCCATCAGTTTGATCGCAGCCTTAGAGCGGATCGCAAGACCACAAGGAAGGGCAGCCAAGGTGTTGCAGCCACAAGGAGGCCATCAACTGCTTCTACTCATGCTCGCAGAAGTGTGGACTCACCAAAACTGTCCAAGGGCAAGCAGACTCTCCTGCCACCAACTAGAACCAAAGTATCAACCCAAAGTCGGTATCATTTTGATTCTCCCAGCAAAGTATTGAACTTGGTGTCAGAGCGCTCCATGCGCAAGAGTCGCAGTGAGGGAAATTTTGGAGTTCTGTGAGAGGCTGTTCCATACCAAATTGATTTGTTCACCACCTGGTTTTTGGAGTGTGCATCTATTTACTTTGTCGTTTCGTATTTGTGTTTTGTTTTCTGTTATCACAGGTTATCCCCTCTCTTTTCATTAAGTTTGGTGCACTAGATATTGATACATTGATTTGTGGGTTGTAATGCCCAATAAGCTGCTTTCTGCCACAGTATTTCTATTCCATTATAGGTTGTTGTTCAGTACTTTCAGAACATCATTTTCAATTTGTCTGAAGAGCAAGTATGGTGCAATTACAATAACTTTATTATGTGGGATTGTCGTGCTGACCCCTAATGAAATTTGGATTAAACAACTCTATCCTATGTGGACAA
>Glyma12g11240.2 sequence type=CDS gene model=Glyma12g11240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTAGGTTTTCTTGTTTCCATGCTAATGTCCAAGGCAACAAGGCAAAGAAAACAGTTCAACCCTCTTCTGAAGCAATGGTGAAGGGTTTGCAAGATGTTACGGAAAATCATGGCTGTAAAGATTCATCTAATCTTCCATGTGCATATTCATCCCCTTCGAAAGAACAAGCACACAAGCAAATAAATGTCATGGAGAATCATAGCAATTGGGATTCTGTTGGGCGCAGTTGTAGGTCAGAGGATCTGAATAGCAAGTTTTCCTTTGAAAACGACAACAATGTTCACCAAACTAGGCATATTAAGAAGAGCCAGTCTCTTCAAAGTGGGCTTGATCAAGGCATCAGGGAAGCTGATGAAGATCTTGGGTTGTCGTGTGATGGTGCCAAAAGCCAGAATGAGTCAACAATTTCTATTAGCAGAAGGTATCATGATGCAAACCCCATTGATCAGTATGGAAATAATCCAAACGTTGAGTTTCAAGTCAGTTCAGGTCTTGCGAATGATGGCTCACTTTTTTCAATAGGAGACCCAATGCCTTCAGATAAAGATGCCCATGAAATTTCTGATACTCCGTTATCTGTTGAATTTGCTGGTGACATTCCTGACCAGACTTTTGTTCCTGGTAGCCTATTTCTAAGGAAGTCACGTTCTTTACCCAATATCAGAGCTTCTATACTTTCTTCTGAAAGAGATGCTTTTAAACATGCATTGTCAAGATCTTCCGATGATCTTCACGCTTTACGCATGTGGCAGAAAGAGGAATTCATCAATGAGTTTGATGATCAAATAAGGGCAGATCAAGAAAGAGAGAATGACATGGGAAAACCTGAAGATGGTCGTATGGACAGTTTCTTTGATGATGGTTTTGATTCTTATCTGCTTTCTGGTTCAGCAAAAGACTGGGTAATGCCAATTACAGATGATACAAGTAATGTCAAAACCCTTCAAGGAGATTCTTTAGTTGACTGTGCGGGTGAATTTCCTAAGAAGGATTTTAAGATTAAGCGCATTGAGGATTGGGTAATTGGTTTGCAGCATTGTGGGCCACCTCTAGAGGAAACAAATGAAGATTTGCCTGAAGTTATTGAACCTTTAATTGATGTTAACACAGTAAATGGCGTGACTGCTGCCAGTGTGAATCATAAGGTCACTCCAGGAATGGAAGCAGCTAAAAGATATATATCTTCTCTGAGTGCTAATGCCACTGCTGCTCAGCTGGGAAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTAAAAGTGCTCAATTTGGCTGGAAATGCTATCGTGAGGATAACTGCTGGTGCTCTTCCTCGCGGACTTCACGCATTGAATTTGTCGAGAAACAAGATCTCCACTATAGAAGGATTACGTGAACTTACTCGGCTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGTCTTGCATCCTGCTCATCTTTGAAGGAGCTGTACCTGGCTGGAAACAAGATCAGTGAAGTAGAGGGTCTGCACCGCCTCTTGAAACTAAGTATTCTGGATCTCCGTTTTAACAAAATTTCAACAGCCAAATGTCTAGGCCAACTTGCAGCCAACTATAATACTTTGCAAGCTATCAACTTGGATGGGAACCCGGCCCAGAAAAATGTTGGAGATGAACAGATGAAGAAATATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAATCGGCAGCCTATGAAAGTGAACTCTTTGAAGGATGGAGCAGAACGTTCGGTTCGGTTAGGAATGAATTCCCATCAGTTTGATCGCAGCCTTAGAGCGGATCGCAAGACCACAAGGAAGGGCAGCCAAGGTGTTGCAGCCACAAGGAGGCCATCAACTGCTTCTACTCATGCTCGCAGAAGTGTGGACTCACCAAAACTGTCCAAGGGCAAGCAGACTCTCCTGCCACCAACTAGAACCAAAGTATCAACCCAAAGTCGGTATCATTTTGATTCTCCCAGCAAAGTATTGAACTTGGTGTCAGAGCGCTCCATGCGCAAGAGTCGCAGTGAGGGAAATTTTGGAGTTCTGTGA >Glyma12g11240.3 sequence type=CDS gene model=Glyma12g11240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTAGGTTTTCTTGTTTCCATGCTAATGTCCAAGGCAACAAGGCAAAGAAAACAGTTCAACCCTCTTCTGAAGCAATGGTGAAGGGTTTGCAAGATGTTACGGAAAATCATGGCTGTAAAGATTCATCTAATCTTCCATGTGCATATTCATCCCCTTCGAAAGAACAAGCACACAAGCAAATAAATGTCATGGAGAATCATAGCAATTGGGATTCTGTTGGGCGCAGTTGTAGGTCAGAGGATCTGAATAGCAAGTTTTCCTTTGAAAACGACAACAATGTTCACCAAACTAGGCATATTAAGAAGAGCCAGTCTCTTCAAAGTGGGCTTGATCAAGGCATCAGGGAAGCTGATGAAGATCTTGGGTTGTCGTGTGATGGTGCCAAAAGCCAGAATGAGTCAACAATTTCTATTAGCAGAAGGTATCATGATGCAAACCCCATTGATCAGTATGGAAATAATCCAAACGTTGAGTTTCAAGTCAGTTCAGGTCTTGCGAATGATGGCTCACTTTTTTCAATAGGAGACCCAATGCCTTCAGATAAAGATGCCCATGAAATTTCTGATACTCCGTTATCTGTTGAATTTGCTGGTGACATTCCTGACCAGACTTTTGTTCCTGGTAGCCTATTTCTAAGGAAGTCACGTTCTTTACCCAATATCAGAGCTTCTATACTTTCTTCTGAAAGAGATGCTTTTAAACATGCATTGTCAAGATCTTCCGATGATCTTCACGCTTTACGCATGTGGCAGAAAGAGGAATTCATCAATGAGTTTGATGATCAAATAAGGGCAGATCAAGAAAGAGAGAATGACATGGGAAAACCTGAAGATGGTCGTATGGACAGTTTCTTTGATGATGGTTTTGATTCTTATCTGCTTTCTGGTTCAGCAAAAGACTGGGTAATGCCAATTACAGATGATACAAGTAATGTCAAAACCCTTCAAGGAGATTCTTTAGTTGACTGTGCGGGTGAATTTCCTAAGAAGGATTTTAAGATTAAGCGCATTGAGGATTGGGTAATTGGTTTGCAGCATTGTGGGCCACCTCTAGAGGAAACAAATGAAGATTTGCCTGAAGTTATTGAACCTTTAATTGATGTTAACACAGTAAATGGCGTGACTGCTGCCAGTGTGAATCATAAGGTCACTCCAGGAATGGAAGCAGCTAAAAGATATATATCTTCTCTGAGTGCTAATGCCACTGCTGCTCAGCTGGGAAATCATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTAAAAGTGCTCAATTTGGCTGGAAATGCTATCGTGAGGATAACTGCTGGTGCTCTTCCTCGCGGACTTCACGCATTGAATTTGTCGAGAAACAAGATCTCCACTATAGAAGGATTACGTGAACTTACTCGGCTTCGTGTCCTAGACCTCAGTTACAACCGTATATTAAGAATTGGACATGGTCTTGCATCCTGCTCATCTTTGAAGGAGCTGTACCTGGCTGGAAACAAGATCAGTGAAGTAGAGGGTCTGCACCGCCTCTTGAAACTAAGTATTCTGGATCTCCGTTTTAACAAAATTTCAACAGCCAAATGTCTAGGCCAACTTGCAGCCAACTATAATACTTTGCAAGCTATCAACTTGGATGGGAACCCGGCCCAGAAAAATGTTGGAGATGAACAGATGAAGAAATATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAATCGGCAGCCTATGAAAGTGAACTCTTTGAAGGATGGAGCAGAACGTTCGGTTCGGTTAGGAATGAATTCCCATCAGTTTGATCGCAGCCTTAGAGCGGATCGCAAGACCACAAGGAAGGGCAGCCAAGGTGTTGCAGCCACAAGGAGGCCATCAACTGCTTCTACTCATGCTCGCAGAAGTGTGGACTCACCAAAACTGTCCAAGGGCAAGCAGACTCTCCTGCCACCAACTAGAACCAAAGTATCAACCCAAAGTCGGTATCATTTTGATTCTCCCAGCAAAGTATTGAACTTGGTGTCAGAGCGCTCCATGCGCAAGAGTCGCAGTGAGGGAAATTTTGGAGTTCTGTGA
>Glyma12g11240.2 sequence type=predicted peptide gene model=Glyma12g11240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFRFSCFHANVQGNKAKKTVQPSSEAMVKGLQDVTENHGCKDSSNLPCAYSSPSKEQAHKQINVMENHSNWDSVGRSCRSEDLNSKFSFENDNNVHQTRHIKKSQSLQSGLDQGIREADEDLGLSCDGAKSQNESTISISRRYHDANPIDQYGNNPNVEFQVSSGLANDGSLFSIGDPMPSDKDAHEISDTPLSVEFAGDIPDQTFVPGSLFLRKSRSLPNIRASILSSERDAFKHALSRSSDDLHALRMWQKEEFINEFDDQIRADQERENDMGKPEDGRMDSFFDDGFDSYLLSGSAKDWVMPITDDTSNVKTLQGDSLVDCAGEFPKKDFKIKRIEDWVIGLQHCGPPLEETNEDLPEVIEPLIDVNTVNGVTAASVNHKVTPGMEAAKRYISSLSANATAAQLGNHGLVVIPFLSAFVSLKVLNLAGNAIVRITAGALPRGLHALNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNTLQAINLDGNPAQKNVGDEQMKKYLQGLLPHLVYYNRQPMKVNSLKDGAERSVRLGMNSHQFDRSLRADRKTTRKGSQGVAATRRPSTASTHARRSVDSPKLSKGKQTLLPPTRTKVSTQSRYHFDSPSKVLNLVSERSMRKSRSEGNFGVL* >Glyma12g11240.3 sequence type=predicted peptide gene model=Glyma12g11240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFRFSCFHANVQGNKAKKTVQPSSEAMVKGLQDVTENHGCKDSSNLPCAYSSPSKEQAHKQINVMENHSNWDSVGRSCRSEDLNSKFSFENDNNVHQTRHIKKSQSLQSGLDQGIREADEDLGLSCDGAKSQNESTISISRRYHDANPIDQYGNNPNVEFQVSSGLANDGSLFSIGDPMPSDKDAHEISDTPLSVEFAGDIPDQTFVPGSLFLRKSRSLPNIRASILSSERDAFKHALSRSSDDLHALRMWQKEEFINEFDDQIRADQERENDMGKPEDGRMDSFFDDGFDSYLLSGSAKDWVMPITDDTSNVKTLQGDSLVDCAGEFPKKDFKIKRIEDWVIGLQHCGPPLEETNEDLPEVIEPLIDVNTVNGVTAASVNHKVTPGMEAAKRYISSLSANATAAQLGNHGLVVIPFLSAFVSLKVLNLAGNAIVRITAGALPRGLHALNLSRNKISTIEGLRELTRLRVLDLSYNRILRIGHGLASCSSLKELYLAGNKISEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNTLQAINLDGNPAQKNVGDEQMKKYLQGLLPHLVYYNRQPMKVNSLKDGAERSVRLGMNSHQFDRSLRADRKTTRKGSQGVAATRRPSTASTHARRSVDSPKLSKGKQTLLPPTRTKVSTQSRYHFDSPSKVLNLVSERSMRKSRSEGNFGVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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