SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g10990

Feature Type:gene_model
Chromosome:Gm12
Start:9008218
stop:9013690
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g10990
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25830AT Annotation by Michelle Graham. TAIR10: terpene synthase-like sequence-1,8-cineole | chr3:9447545-9450316 FORWARD LENGTH=600 SoyBaseE_val: 1.00E-153ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0016099GO-bp Annotation by Michelle Graham. GO Biological Process: monoterpenoid biosynthetic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0000287GO-mf Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding SoyBaseN/AISS
GO:0010333GO-mf Annotation by Michelle Graham. GO Molecular Function: terpene synthase activity SoyBaseN/AISS
GO:0016829GO-mf Annotation by Michelle Graham. GO Molecular Function: lyase activity SoyBaseN/AISS
GO:0034768GO-mf Annotation by Michelle Graham. GO Molecular Function: (E)-beta-ocimene synthase activity SoyBaseN/AISS
GO:0050551GO-mf Annotation by Michelle Graham. GO Molecular Function: myrcene synthase activity SoyBaseN/AISS
PF01397PFAM Terpene synthase, N-terminal domain JGI ISS
PF03936PFAM Terpene synthase family, metal binding domain JGI ISS
UniRef100_B1P189UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-ocimene synthase n=1 Tax=Phaseolus lunatus RepID=B1P189_PHALU SoyBaseE_val: 0ISS
UniRef100_UPI000233C8CDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C8CD related cluster n=1 Tax=unknown RepID=UPI000233C8CD SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g10990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g10990
ParalogEvidenceComments
Glyma06g45780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g10990 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g102000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g10990
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g10990
>Glyma12g10990.1   sequence type=CDS   gene model=Glyma12g10990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCTAGACAGCAGTTCCATGTTGCTAAATTTTTCCTTCACCCCACCACTTGTTAGTTTCAGCAAACATCAAAAACAACGAGGGATTAATCTTCTAGTGCGTAGAATTGGTTCCACCAGCCAGTATTACTGCTTGGCAACAAGCACAAACGTTCGTGAAAGAAAATCAGCCAATTACCAGCCTAACCTCTGGAATTATGATTTTTTGCAGTCATTGAAGAATGACTATGCGGATGTAAAATATGAGATAATGGCCAGGAAGCTGGAGGAAGTGAGGAGAATGATAAAGGATGAAAATTCAGAAATATGGGTCACACTAGATCTGATTGACAATGTGAAACGCCTGGGCCTCAGCTATCACTTTGACAAGGAGATAAGAGAAGCCCTTCATAGGTTTCTCTCTTTAGAAAGATGTAATGCCACGAATATTCACACAGGCCTGCATGAGACCGCTTTAAGCTTCAGGCTCCTTAGAGAATATGGAGATGATGTTTCAGCAGATGTATTTGAGAGGTTTGAGGACAACAACGGTAATTTCAAGGCAAGCCTTAGCAGAGATATGAAGGGAATGTTGAGTCTGTACGAGGCATCGTTTCTCAGTTATGAAGAAGAACTGATTCTGGATAAGACCAAGGCCTTCAGTAGCTTCCATCTAAGGGGTGCCCTCAAAGAAGGTAGAAGCAATAGTATGCTCTTAGAACAAGTGAATCATGCATTGGAGCTTCCACTGCATCACAGAATCCAAAGGCTTGAAGCCAGGTGGTATATTGAATCTTATGCTAAAAGAAAGGATGCAAATTGGGTGCTGCTTGAAGCAGCAAAACTAGATTTCAACATTGTGCAGTCAACACTGCAAAAGGACCTCCAAGAAATGTCAAGGTGGTGGAAACGGATGGGACTAGCTCCAAAGTTAAGCTTTAGCCGGGACAGGCTAATGGAGTGTTTCTTTTGGAGCATGGGAATGGCATTCGAGCCTCAGTTCAGTGATCTTCGCAAAGGTTTAACCAAAGTCACTTCTCTAATAACTACAATTGACGACGTTTATGATGTTTATGGCTCCTTGGATGAGCTAGAACTTTTCACAAAAGCCGTTGAAAGTTGGGATATTAAAGCTGTTCAAGTTATGCCGGAGTATATGAAGATATGTTTCCTTGCTCTCTACAACACTGTCAACGAATTCGCTTATGATGCCCTTAAAATCAAAGGACAAAATATCCTTCCCCATCTTACCAAGGCGTGGTCGGTTATGTTGAAAGCATTCTTGCAAGAAGCCAAGTGGTGCCGGGATAAATATTTGCCACCATTTGAAGACTATCTCAACAATGCATGGGTGTCTGTGTCTGGAGTAGTGATACTGACCCATGCCTATTTCTTGTTGAATGATAACATCACTAAGGATGCACTTGATTCCTTGGACAATTATCATGATCTTTTGCGTAGGCCATCCATTATTTTTCGACTTTGCAATGATTTGGGTACTTCAAGGGCTGAGTTACAAAGAGGTGAAGCAGCAAGCTCGATCGTGTGTAACATGCGTGAAAGTTGTGTAACTGAGGAGGGTGCTTACAAAAACATACACAGTTTGCTTGATGAAACTTGGAAGAAGATGAACAAAGATCGAGCCATGCATTCTCCTTTTTCAAAACCATTTGTGGAAGCAGCAATCAACCTTGCTAGAATCTCTCACTGCACATACCTTAATGGAGATGGCCATGGTGCCCCAGATATTGCAGCCAAGAATCGGATTCGGTCCTTGATAATTGAACCCATCCCACTTAGGGAGATAAATGCGGATATTGTTCAGTGA
Predicted protein sequences of Glyma12g10990
>Glyma12g10990.1   sequence type=predicted peptide   gene model=Glyma12g10990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALDSSSMLLNFSFTPPLVSFSKHQKQRGINLLVRRIGSTSQYYCLATSTNVRERKSANYQPNLWNYDFLQSLKNDYADVKYEIMARKLEEVRRMIKDENSEIWVTLDLIDNVKRLGLSYHFDKEIREALHRFLSLERCNATNIHTGLHETALSFRLLREYGDDVSADVFERFEDNNGNFKASLSRDMKGMLSLYEASFLSYEEELILDKTKAFSSFHLRGALKEGRSNSMLLEQVNHALELPLHHRIQRLEARWYIESYAKRKDANWVLLEAAKLDFNIVQSTLQKDLQEMSRWWKRMGLAPKLSFSRDRLMECFFWSMGMAFEPQFSDLRKGLTKVTSLITTIDDVYDVYGSLDELELFTKAVESWDIKAVQVMPEYMKICFLALYNTVNEFAYDALKIKGQNILPHLTKAWSVMLKAFLQEAKWCRDKYLPPFEDYLNNAWVSVSGVVILTHAYFLLNDNITKDALDSLDNYHDLLRRPSIIFRLCNDLGTSRAELQRGEAASSIVCNMRESCVTEEGAYKNIHSLLDETWKKMNKDRAMHSPFSKPFVEAAINLARISHCTYLNGDGHGAPDIAAKNRIRSLIIEPIPLREINADIVQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo