Glyma12g10430 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g10430

Feature Type:	gene_model
Chromosome:	Gm12
Start:	8368975
stop:	8369922
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g10430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04090	AT	Annotation by Michelle Graham. TAIR10: small and basic intrinsic protein 1A \| chr3:1072340-1074031 REVERSE LENGTH=240	SoyBase	E_val: 9.00E-55	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0046685	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015250	GO-mf	Annotation by Michelle Graham. GO Molecular Function: water channel activity	SoyBase	N/A	ISS
KOG0223	KOG	Aquaporin (major intrinsic protein family)	JGI		ISS
PTHR19139	Panther	AQUAPORIN TRANSPORTER	JGI		ISS
PTHR19139:SF3	Panther	MAJOR INTRINSIC PROTEIN	JGI		ISS
PF00230	PFAM	Major intrinsic protein	JGI		ISS
UniRef100_C6TF06	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TF06_SOYBN	SoyBase	E_val: 3.00E-169	ISS
UniRef100_G7JDK7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin SIP1-1 n=1 Tax=Medicago truncatula RepID=G7JDK7_MEDTR	SoyBase	E_val: 6.00E-111	ISS

Expression Patterns of Glyma12g10430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g10430

Paralog	Evidence	Comments
Glyma06g46340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g10430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g097800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g10430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g10430

Limit To All Plant Sequences

>Glyma12g10430.1   sequence type=CDS   gene model=Glyma12g10430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTGGATAAAGGCAGCAATTGGAGATGCAATTTTGACATCAATGTGGGTTTTCATAATCTCAACATTAAGGATTGTCACAACTGAGATAACAGTTTTCCTTGGCCTCCAACCATTTTTCCTTGCAGGTCTCATAATCAGCACCATCCTAAACTCCATCTATGTCCTCACCATAAGCTTCATTGGAAGAATCTTAGGTGGTGTCAGCTTCAACCCTTCAACAAGTCTTTCTTTCTACACTGCAGGGTTGAGGCCTGACTCATCCCTTTCATCAATGGCAGTGAGGTTCCCTGCACAGGCATATGGTGGTGCTGTTGGCATCAAAACCCTTCTTCTAGTGATGCCATCTCACTACAAGGACATGCTGAAGGGACCTTTCTTGAAGGTGGACTTGCATTCTGGTGCTGTTGCTGAAGGGCTGTTGACTTTCATTCACAACATGGCTATCTTCTTTGTCATGTTTAAGGGTCCTAGGAACCCTTTTGTGAAGGTGTATTTGCTCTCTGTGACTACTGCTGCTTTGGCTATTCTTGGAGGTGGCTTCACTGGGCCTTCCATGAACCCTGCCAATGCCTTTGGATGGGCCTTTGTCAACAACAAGCACAACACTTGGGAGCAATTTTATGTCTATTGGATTGGTCCCTTCATAGGGGCTTCCTCAGCTGCTTTGATTTTCAGGTCTATGTTTATGCCACCAATCAAGCAGAAGAAAGCTTGA

Predicted protein sequences of Glyma12g10430

Limit To All Plant Sequences

>Glyma12g10430.1   sequence type=predicted peptide   gene model=Glyma12g10430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWIKAAIGDAILTSMWVFIISTLRIVTTEITVFLGLQPFFLAGLIISTILNSIYVLTISFIGRILGGVSFNPSTSLSFYTAGLRPDSSLSSMAVRFPAQAYGGAVGIKTLLLVMPSHYKDMLKGPFLKVDLHSGAVAEGLLTFIHNMAIFFVMFKGPRNPFVKVYLLSVTTAALAILGGGFTGPSMNPANAFGWAFVNNKHNTWEQFYVYWIGPFIGASSAALIFRSMFMPPIKQKKA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain