SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g10400

Feature Type:gene_model
Chromosome:Gm12
Start:8312923
stop:8316735
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g10400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42570AT Annotation by Michelle Graham. TAIR10: B-cell receptor-associated 31-like | chr5:17021459-17022497 REVERSE LENGTH=218 SoyBaseE_val: 6.00E-104ISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1962 KOG B-cell receptor-associated protein and related proteins JGI ISS
PTHR12701Panther BCR-ASSOCIATED PROTEIN, BAP JGI ISS
PTHR12701:SF1Panther B-CELL RECEPTOR-ASSOCIATED PROTEIN 31RELATED JGI ISS
PF05529PFAM B-cell receptor-associated protein 31-like JGI ISS
UniRef100_B9RXH8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bcr-associated protein, bap, putative n=1 Tax=Ricinus communis RepID=B9RXH8_RICCO SoyBaseE_val: 1.00E-95ISS
UniRef100_I1LRP3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LRP3_SOYBN SoyBaseE_val: 2.00E-157ISS

Expression Patterns of Glyma12g10400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g10400
ParalogEvidenceComments
Glyma06g46370 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g10400 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g097500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g10400
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g10400
>Glyma12g10400.1   sequence type=CDS   gene model=Glyma12g10400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAGCTACTCTACACTGCGATTTTCTCCGAAATGCTTTTGATTCTCACGCTCGTCTTCAAAACCCCACTGAGAAAACTCGTCATCGTTTCCCTCGATAGTGTGAAGCGCGGTCGCGGTCCCGTGGTGGTTTCCACCGTGGGCGCCACATTGATGGTGGTTCTCGCTTCGAGCCTCTACAGCATGGCCAAGATCCAGCAACGCACCCTCGAGGCCGGCATAGTCAACCCCACCGACCAAGTCCTCATGTCCAAGCACATGCTCGAAGCTTCTCTCATGGGGTTTCTGCTGTTCCTCTCTCTGATGATTGATAGATTGCACCATTACATAAGAGAGCTTCGGTCACTCAGGAAGACCATGGAAGCTATTAAGAAACAAAGCCGAAGTTTTGAAGATGGTAAAAATGGAAATTCAGAGGAACATAAAGCATTGAATGAAGAAATTACCACATTGAAGTCTAAAATTAAGAAACTAGAATCTGAATGTGAGGCAAAAGGAAGTCAAGCTAAGACTTTGGAAACTGAAGTAGAGGCTCTTAAAAAGCAATCCGAGGGGTTCCTTATGGAATATGATCGCCTCTTGGAAGACAATCAGAGTCTTAGGAGTCAGTTGCAGGCCATTGACCAGAGCCCTTTGAATTTTGATAATAAAAAGAGTATGTGA
Predicted protein sequences of Glyma12g10400
>Glyma12g10400.1   sequence type=predicted peptide   gene model=Glyma12g10400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQLLYTAIFSEMLLILTLVFKTPLRKLVIVSLDSVKRGRGPVVVSTVGATLMVVLASSLYSMAKIQQRTLEAGIVNPTDQVLMSKHMLEASLMGFLLFLSLMIDRLHHYIRELRSLRKTMEAIKKQSRSFEDGKNGNSEEHKALNEEITTLKSKIKKLESECEAKGSQAKTLETEVEALKKQSEGFLMEYDRLLEDNQSLRSQLQAIDQSPLNFDNKKSM*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo